View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4234_low_8 (Length: 250)
Name: NF4234_low_8
Description: NF4234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4234_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 1815494 - 1815735
Alignment:
| Q |
1 |
ctacattaaggtctgcatttatccaagagtgcttatccattaacctcattccctccaattccatagccacttccttcatgcttggtctttcctctcctat |
100 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1815494 |
ctacattaaggtctgcattgatccaagagtgcttatccattaacctcattccctccaattccatagccacttccttcatgcttggtctttcctcccctat |
1815593 |
T |
|
| Q |
101 |
aagtctcaagcagttcgccgcaagaacagccacctccatgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcc |
200 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1815594 |
aagtctcaaacagttcgccgcaagaacagccacctccatgatcacttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcc |
1815693 |
T |
|
| Q |
201 |
tttttcaagcaagataaaaagtgcgtagcaagacttcttctc |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1815694 |
tttttcaagcaagataaaaagtgcgtagcaagacttcttctc |
1815735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 1857530 - 1857310
Alignment:
| Q |
21 |
atccaagagtgcttatccattaacctcattccctccaattccatagccacttccttcatgcttggtctttcctctcctataagtctcaagcagttcgccg |
120 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||| || ||||||| |
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| T |
1857530 |
atccaagagtgcttattcattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccg |
1857431 |
T |
|
| Q |
121 |
caagaacagccacctccatgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcctttttcaagcaagataaaaa |
220 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
1857430 |
caagaacagccacctccttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaatacattatcctttttcaagcaagatagaaa |
1857331 |
T |
|
| Q |
221 |
gtgcgtagcaagacttcttct |
241 |
Q |
| |
|
||| |||||||||||||||| |
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|
| T |
1857330 |
atgcatagcaagacttcttct |
1857310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 1843519 - 1843298
Alignment:
| Q |
21 |
atccaagagtgcttatccattaacctcattccctccaattccatagccacttccttcatgcttggtctttcctctcctataagtctcaagcagttcgccg |
120 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||| || ||||||| |
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|
| T |
1843519 |
atccaagagtgcttattcattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccg |
1843420 |
T |
|
| Q |
121 |
caagaacagccacctccatgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcctttttcaagcaagataaaaa |
220 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| || |
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|
| T |
1843419 |
caagaacagccacctccttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcttttttcaatcaagatagtaa |
1843320 |
T |
|
| Q |
221 |
gtgcgtagcaagacttcttctc |
242 |
Q |
| |
|
| | | ||||||||||||||| |
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|
| T |
1843319 |
attcattgcaagacttcttctc |
1843298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 1869133 - 1868908
Alignment:
| Q |
16 |
catttatccaagagtgcttatccattaacctcattccctccaattccatagccacttccttcatgcttggtctttcctctcctataagtctcaagcagtt |
115 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||| || || |
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|
| T |
1869133 |
cattgatccaagagtgcttattcattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacactt |
1869034 |
T |
|
| Q |
116 |
cgccgcaagaacagccacctccatgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcctttttcaagcaagat |
215 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||| |
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|
| T |
1869033 |
cgccgcaagaacagccacctccttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaatacattatcttttttcaatcaagat |
1868934 |
T |
|
| Q |
216 |
aaaaagtgcgtagcaagacttcttct |
241 |
Q |
| |
|
| || ||| | |||||||||||||| |
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|
| T |
1868933 |
agtaaatgcattgcaagacttcttct |
1868908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 195
Target Start/End: Original strand, 9229131 - 9229304
Alignment:
| Q |
22 |
tccaagagtgcttatccattaacctcattccctccaattccatagccacttccttcatgcttggtctttcctctcctataagtctcaagcagttcgccgc |
121 |
Q |
| |
|
|||||| |||||| ||||||||||| | ||||| | |||||||||||||| |||||||| ||||||||||| ||| ||||||||||||| | || || |
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|
| T |
9229131 |
tccaagggtgcttctccattaaccttaacccctctagctccatagccacttctttcatgctaggtctttcctcgcctttaagtctcaagcaccttgcagc |
9229230 |
T |
|
| Q |
122 |
aagaacagccacctccatgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacat |
195 |
Q |
| |
|
||||| ||| || ||| | ||||| | ||||| || |||||| | | |||| |||||| ||||||| |||||| |
|
|
| T |
9229231 |
aagaatagcaacttccttaatctcctccttgttctcatcattcaaaataccaacttgaagaacttcagacacat |
9229304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 235
Target Start/End: Complemental strand, 9119097 - 9118902
Alignment:
| Q |
40 |
ttaacctcattccctccaattccatagccacttccttcatgcttggtctttcctctcctataagtctcaagcagttcgccgcaagaacagccacctccat |
139 |
Q |
| |
|
||||||| || || ||||| |||||||| | ||||||||| || ||||||||||||||| ||||||||| || | || ||||||| ||| |||||| | |
|
|
| T |
9119097 |
ttaaccttataccatccaactccatagctatttccttcatactaggtctttcctctcctcgaagtctcaaacaccttgctgcaagaatagcaacctcctt |
9118998 |
T |
|
| Q |
140 |
gatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcctttttcaagcaagataaaaagtgcgtagcaagact |
235 |
Q |
| |
|
||||||| ||||| || |||||| | | ||| |||||||| ||||||| | ||||| | ||| || ||||| || |||||| |||||||||| |
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|
| T |
9118997 |
aatctcttccttgttatcatcattcaaaattccaacttgaatagcttcaaaaagtttatcttgttttaaacaagacaagaagtgcatagcaagact |
9118902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 36 - 235
Target Start/End: Original strand, 9161351 - 9161550
Alignment:
| Q |
36 |
tccattaacctcattccctccaattccatagccacttccttcatgcttggtctttcctctcctataagtctcaagcagttcgccgcaagaacagccacct |
135 |
Q |
| |
|
||||||||||| || || ||||| ||||| ||||||||||||||||| || ||||| || ||| | |||||||| || | || ||||||| ||| |||| |
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|
| T |
9161351 |
tccattaaccttataccatccaactccattgccacttccttcatgctaggcctttcatcccctcttagtctcaaacaccttgctgcaagaatagcaacct |
9161450 |
T |
|
| Q |
136 |
ccatgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcctttttcaagcaagataaaaagtgcgtagcaagact |
235 |
Q |
| |
|
|| | ||||| | |||||||| ||||| | | |||| |||||||| ||||||| | |||| | ||| || ||||| ||||||||| |||||||||| |
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|
| T |
9161451 |
ccttaatctcctccttgttttcatcatttaaaataccaacttgaatagcttcaaaaattctatcttgttttaaacaagacaaaaagtgcatagcaagact |
9161550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 235
Target Start/End: Original strand, 9199738 - 9199943
Alignment:
| Q |
30 |
tgcttatccattaacctcattccctccaattccatagccacttccttcatgcttggtctttcctctcctataagtctcaagcagttcgccgcaagaacag |
129 |
Q |
| |
|
||||| ||||||||||| || || ||||| |||||||| |||||| |||| || |||||||| || ||| ||||||| || || | || ||||||| || |
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|
| T |
9199738 |
tgcttctccattaaccttataccatccaactccatagctacttccctcatactaggtctttcatcacctctaagtcttaaacaccttgcagcaagaatag |
9199837 |
T |
|
| Q |
130 |
ccacctccatgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcctttttcaagcaagataaaaagtgcgtagc |
229 |
Q |
| |
|
| |||||| | ||||||| |||||||| |||| | | | ||| |||||||| | ||||| | ||||| | ||| || ||||| ||||||||| |||| |
|
|
| T |
9199838 |
caacctccttaatctctttcttgttttcatcatccaaaattccaacttgaatagcatcaaaaagtttatcttgttttaaacaagacaaaaagtgcatagc |
9199937 |
T |
|
| Q |
230 |
aagact |
235 |
Q |
| |
|
|||||| |
|
|
| T |
9199938 |
aagact |
9199943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 235
Target Start/End: Original strand, 9170171 - 9170376
Alignment:
| Q |
30 |
tgcttatccattaacctcattccctccaattccatagccacttccttcatgcttggtctttcctctcctataagtctcaagcagttcgccgcaagaacag |
129 |
Q |
| |
|
||||| ||||||||||| || || ||||| ||||| |||||||||||||| | |||||||| || ||| ||||||| || || | | ||||||| || |
|
|
| T |
9170171 |
tgcttctccattaaccttatgccatccaactccattgccacttccttcatacaaggtctttcatcccctctaagtcttaaacaccttgaagcaagaatag |
9170270 |
T |
|
| Q |
130 |
ccacctccatgatctcttgtttgttttcttcattccacaaa-ccatcttgaataacttcaaacacattatcctttttcaagcaagataaaaagtgcgtag |
228 |
Q |
| |
|
| |||||| | ||||||| ||||| || || || |||||| ||| |||||||| ||||||| | ||||| | ||| || ||||| ||||||||| ||| |
|
|
| T |
9170271 |
caacctccttaatctctttcttgttatcatcgtt-cacaaatccaacttgaatagcttcaaaaaatttatcttgttttaaacaagacaaaaagtgcatag |
9170369 |
T |
|
| Q |
229 |
caagact |
235 |
Q |
| |
|
||||||| |
|
|
| T |
9170370 |
caagact |
9170376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 235
Target Start/End: Original strand, 9218254 - 9218459
Alignment:
| Q |
30 |
tgcttatccattaacctcattccctccaattccatagccacttccttcatgcttggtctttcctctcctataagtctcaagcagttcgccgcaagaacag |
129 |
Q |
| |
|
||||| ||||||||||| || || ||||| |||||||| |||||| |||| || |||||||| || ||| ||||||| || || | || ||||||| || |
|
|
| T |
9218254 |
tgcttctccattaaccttatgccatccaactccatagctacttccctcatactaggtctttcatcacctctaagtcttaaacaccttgcagcaagaatag |
9218353 |
T |
|
| Q |
130 |
ccacctccatgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcctttttcaagcaagataaaaagtgcgtagc |
229 |
Q |
| |
|
|||||| | ||||||| |||||||| ||||| | | ||| |||||||| | ||||| | ||||| | ||| || ||||| ||||||||| |||| |
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|
| T |
9218354 |
aaacctccttaatctctttcttgttttcatcattgaaaattccaacttgaatagcatcaaaaagtttatcttgttttaaacaagacaaaaagtgcatagc |
9218453 |
T |
|
| Q |
230 |
aagact |
235 |
Q |
| |
|
|||||| |
|
|
| T |
9218454 |
aagact |
9218459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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