View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4235_high_1 (Length: 382)
Name: NF4235_high_1
Description: NF4235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4235_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 16 - 374
Target Start/End: Complemental strand, 13031411 - 13031059
Alignment:
| Q |
16 |
tatccaaagtaagttaaaacaaaattcatcctaatcttattcctaaatcaaattaatcatatcattaatcatgtttatactgtgatgtttaatattaatc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||| |||||||||||||||||| |
|
|
| T |
13031411 |
tatccaaagtaagttaaaacaaaattcatcctaatcttattcctaaatcaaattaatcatgt--ttaat---gtttatactctgatgtttaatattaatc |
13031317 |
T |
|
| Q |
116 |
atggatgtttatttctttgtgcagaatcgatgtggaatatgtatgcaaagtgtgaaaagtggtcaaggaacagcaattttcacagctgaatgttctcaca |
215 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13031316 |
atggttgtttattt-tttgtgcagaatcgatgtggaatatgtatgcaaagtgtgaaaagtggtcaaggaacagcaattttcacagctgaatgttctcaca |
13031218 |
T |
|
| Q |
216 |
cttttcattttccttgtatatcaactcacgtgacgaagcaacctttgcacgtgtgtccagtttgtggtacgaattggaaggaactaccggtgctttcaat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13031217 |
cttttcattttccttgtatatcaactcacgtgacgaagcaacctttgcacgtgtgtccagtttgtggtacgaattggaaggaactaccggtgctttcaat |
13031118 |
T |
|
| Q |
316 |
tcaacacgaaaagaacgaaaacagagattcaagaaatttcaaagtctacaatgatgatg |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13031117 |
tcaacacgaaaagaacgaaaacagagattcaagaaatttcaaagtctacaatgatgatg |
13031059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 16 - 374
Target Start/End: Complemental strand, 13101594 - 13101242
Alignment:
| Q |
16 |
tatccaaagtaagttaaaacaaaattcatcctaatcttattcctaaatcaaattaatcatatcattaatcatgtttatactgtgatgtttaatattaatc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||| ||||||||| |||||||||||||||||| |
|
|
| T |
13101594 |
tatccaaagtaagttaaaacaaaattcatcctaatcttattcccaaatcaaattaatcatgt--ttaat---gtttatactctgatgtttaatattaatc |
13101500 |
T |
|
| Q |
116 |
atggatgtttatttctttgtgcagaatcgatgtggaatatgtatgcaaagtgtgaaaagtggtcaaggaacagcaattttcacagctgaatgttctcaca |
215 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13101499 |
atggttgtttattt-tttgtgcagaatcgatgtggaatatgtatgcaaagtgtgaaaagtggtcaaggaacagcaattttcacagctgaatgttctcaca |
13101401 |
T |
|
| Q |
216 |
cttttcattttccttgtatatcaactcacgtgacgaagcaacctttgcacgtgtgtccagtttgtggtacgaattggaaggaactaccggtgctttcaat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13101400 |
cttttcattttccttgtatatcaactcacgtgacgaagcaacctttgcacgtgtgtccagtttgtggtacgaattggaaggaactaccggtgctttcaat |
13101301 |
T |
|
| Q |
316 |
tcaacacgaaaagaacgaaaacagagattcaagaaatttcaaagtctacaatgatgatg |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13101300 |
tcaacacgaaaagaacgaaaacagagattcaagaaatttcaaagtctacaatgatgatg |
13101242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 205 - 344
Target Start/End: Original strand, 5531688 - 5531827
Alignment:
| Q |
205 |
atgttctcacacttttcattttccttgtatatcaactcacgtgacgaagcaacctttgcacgtgtgtccagtttgtggtacgaattggaaggaactaccg |
304 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5531688 |
atgttctcacacttttcatttcccttgtatatcaactcacgtgacgaagcaacccttgcacgtgtgtccagtttgtggtacgaattggaaggaacttccg |
5531787 |
T |
|
| Q |
305 |
gtgctttcaattcaacacgaaaagaacgaaaacagagatt |
344 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
5531788 |
gtgctttcaattaaactcgaaaagaacgaaaacagagatt |
5531827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 131 - 248
Target Start/End: Complemental strand, 28182895 - 28182778
Alignment:
| Q |
131 |
tttgtgcagaatcgatgtggaatatgtatgcaaagtgtgaaaagtggtcaaggaacagcaattttcacagctgaatgttctcacacttttcattttcctt |
230 |
Q |
| |
|
|||||| ||||| ||||||||| |||| ||| |||||||||| |||| |||||| ||||||||||||||| ||||| ||||| | ||||| ||||| | |
|
|
| T |
28182895 |
tttgtgtagaatttatgtggaatttgtacgcatagtgtgaaaactggtgaaggaaaagcaattttcacagcagaatgctctcatatctttcactttccat |
28182796 |
T |
|
| Q |
231 |
gtatatcaactcacgtga |
248 |
Q |
| |
|
| ||| || ||||||||| |
|
|
| T |
28182795 |
gcatagcagctcacgtga |
28182778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 209 - 344
Target Start/End: Complemental strand, 19851820 - 19851685
Alignment:
| Q |
209 |
tctcacacttttcattttccttgtatatcaactcacgtgacgaagcaacctttgcacgtgtgtccagtttgtggtacgaattggaaggaactaccggtgc |
308 |
Q |
| |
|
||||||| ||||||||| |||||||| |||| |||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||| || |||| |
|
|
| T |
19851820 |
tctcacatttttcatttcccttgtatgtcaaatcacaagacgaagcaacccttgcacgtgtgtccagtttgttgtacgaattggaaggaacttccagtgc |
19851721 |
T |
|
| Q |
309 |
tttcaattcaacacgaaaagaacgaaaacagagatt |
344 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |
|
|
| T |
19851720 |
tttcaattcaacacgaaaagagcgaaaacagagatt |
19851685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University