View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4235_low_1 (Length: 788)
Name: NF4235_low_1
Description: NF4235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4235_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 186 - 463
Target Start/End: Original strand, 1869001 - 1869268
Alignment:
| Q |
186 |
tttgtgcttcatcttgtcacctaacttgaacccaatacttaaaattttgcatataacatatgctccaaaatgttacttcttgcatagtaacaaaaataga |
285 |
Q |
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| T |
1869001 |
tttgtgcttcatcttgtcacctaacttgaacccaatacttaaaattttgcatataacatatgctccaaaatgttacttcttgcatagtaataaaaataga |
1869100 |
T |
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| Q |
286 |
tctacacattaagtaaatgagaatacaactagtagtaactacacttgtttcatacgtaactagcacatgctattgtgtcgatatcaccattctgagagtt |
385 |
Q |
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| T |
1869101 |
tctacacat----------agaatacaactagtagtaactacacttgtttcatacgtaactagcacatgctattgtgtcgatatcaccattctgagagtt |
1869190 |
T |
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| Q |
386 |
ttcactaattcattcactgagatgttgtagccatcacccatctgcattatatatatcatagcaagtcagaatctcatg |
463 |
Q |
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| T |
1869191 |
ttcactaattcattcactgagatgttgtagccatcacccatctgcattatatatatcatagcaagtcagaatctcatg |
1869268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 545 - 779
Target Start/End: Original strand, 1869349 - 1869582
Alignment:
| Q |
545 |
ctaaccgtcatactgaaacttatgtgggtttcaccactttacatgaaatacatttctaaattgtagtatccacactaaatttcatgcgataagaaagtga |
644 |
Q |
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| T |
1869349 |
ctaaccgtcatgttgaaacttatgtgggtctcatcactttacgtgggatacatttctaaattatagtatccacactaaatttcatgcgataagaaagtga |
1869448 |
T |
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| Q |
645 |
ctgttagagagtgttaagaaagagagtgtttccgatattcctatataaatagccgttatcaatccgcatatgttttttaaaagaaaaatgagactctttt |
744 |
Q |
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| T |
1869449 |
ctattagagagtgttaagaaagagagtgtttccgatattcctatataaa-agccgttatcaatccgcatatgttttttaaaagaaaaatgagactctttt |
1869547 |
T |
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| Q |
745 |
agagcattatgtaccttacaaatgatgatgatgtc |
779 |
Q |
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| T |
1869548 |
agagcattatgtaccttacaaatgatggtgatgtc |
1869582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 318 - 460
Target Start/End: Original strand, 1865056 - 1865198
Alignment:
| Q |
318 |
tagtaactacacttgtttcatacgtaactagcacatgctattgtgtcgatatcaccattctgagagttttcactaattcattcactgagatgttgtagcc |
417 |
Q |
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| T |
1865056 |
tagtaactacacttgtttcatacgtaactagcacatgctattgtctagagatcacctttcttagagttttcactaattcattcactgtgatgttgtagcc |
1865155 |
T |
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| Q |
418 |
atcacccatctgcattatatatatcatagcaagtcagaatctc |
460 |
Q |
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| T |
1865156 |
atcacccatctgcattatatataccatagcaagttagaatctc |
1865198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 31 - 125
Target Start/End: Original strand, 1858963 - 1859060
Alignment:
| Q |
31 |
ttcccatacataattgttcttttttaaaacttctcttgcatgttcctgatgtg---ttagctatttgaacttcgaatatttataaaccttcgaatact |
125 |
Q |
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| T |
1858963 |
ttcccaaacataattgtccttttttaaaacttctcttgcatgttccttatgtgtaattagttatttgaactttaaatatttataaaccttcgattact |
1859060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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