View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4236_high_12 (Length: 248)

Name: NF4236_high_12
Description: NF4236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4236_high_12
NF4236_high_12
[»] chr2 (2 HSPs)
chr2 (1-231)||(45217021-45217251)
chr2 (122-189)||(10543739-10543806)
[»] chr1 (4 HSPs)
chr1 (122-189)||(35005187-35005254)
chr1 (121-161)||(22324955-22324995)
chr1 (122-189)||(19932782-19932849)
chr1 (128-189)||(27201717-27201778)
[»] chr4 (1 HSPs)
chr4 (121-171)||(23914373-23914423)
[»] chr5 (1 HSPs)
chr5 (121-189)||(2838818-2838884)
[»] chr3 (4 HSPs)
chr3 (128-161)||(45139533-45139566)
chr3 (122-191)||(45786241-45786310)
chr3 (123-155)||(31831261-31831293)
chr3 (122-150)||(45948904-45948932)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 45217021 - 45217251
Alignment:
Q  1 acagaatggaaaattagaaactgcaataatccacaaatcatgagatatactaattctgagagcagaatttattttgaaccttaatagaaaatgatattaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45217021 acagaatggaaaattagaaactgcaataatccacaaatcatgagatataccaattctgagagcagaatttattttgaaccttaatagaaaatgatattaa 45217120  T
Q  101 ggggatccttggcacaaatataaaaatagggtaaggctgcatacaatacaacaaaaatggtaggctcccttttcggaccgtgcgtatgctgaaagtttgg 200  Q
    ||||||||||||| ||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  45217121 ggggatccttggcgcaaaggtaaaaatagggtaagactgcatacaatacaacaaaaatggtaggctccctttccggaccgtgcgtatgcagaaagtttgg 45217220  T
Q  201 ctgcatttagtttcaaagtataccaactaat 231  Q
    |||||||||||||||||||||||||||||||    
T  45217221 ctgcatttagtttcaaagtataccaactaat 45217251  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 189
Target Start/End: Original strand, 10543739 - 10543806
Alignment:
Q  122 aaaaatagggtaaggctgcatacaatacaacaaaaatggtaggctcccttttcggaccgtgcgtatgc 189  Q
    ||||| ||||||||||||| ||||||||| |||||||||| ||  |||||  |||||| |||||||||    
T  10543739 aaaaacagggtaaggctgcgtacaatacaccaaaaatggtgggaccccttcccggaccctgcgtatgc 10543806  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 189
Target Start/End: Original strand, 35005187 - 35005254
Alignment:
Q  122 aaaaatagggtaaggctgcatacaatacaacaaaaatggtaggctcccttttcggaccgtgcgtatgc 189  Q
    ||||| ||||||||||||||||||||||| |||||||||| ||  |||||  |||||| |||||||||    
T  35005187 aaaaacagggtaaggctgcatacaatacaccaaaaatggtgggaccccttcccggaccctgcgtatgc 35005254  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 22324955 - 22324995
Alignment:
Q  121 taaaaatagggtaaggctgcatacaatacaacaaaaatggt 161  Q
    |||||| ||||||||||||||||||||||| ||||||||||    
T  22324955 taaaaacagggtaaggctgcatacaatacaccaaaaatggt 22324995  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 19932849 - 19932782
Alignment:
Q  122 aaaaatagggtaaggctgcatacaatacaacaaaaatggtaggctcccttttcggaccgtgcgtatgc 189  Q
    ||||| ||||||||||||| ||||||||| |||||||||| ||  |||||  |||||| |||||||||    
T  19932849 aaaaacagggtaaggctgcgtacaatacaccaaaaatggtgggaccccttcccggaccctgcgtatgc 19932782  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 27201717 - 27201778
Alignment:
Q  128 agggtaaggctgcatacaatacaacaaaaatggtaggctcccttttcggaccgtgcgtatgc 189  Q
    ||||||||||||| ||||||||| |||||||||| ||  |||||  |||||| |||||||||    
T  27201717 agggtaaggctgcgtacaatacaccaaaaatggtgggaccccttcccggaccttgcgtatgc 27201778  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 23914423 - 23914373
Alignment:
Q  121 taaaaatagggtaaggctgcatacaatacaacaaaaatggtaggctccctt 171  Q
    ||||||||||||||| |||||||||||||| |||| ||||| || ||||||    
T  23914423 taaaaatagggtaagactgcatacaatacatcaaatatggtgggatccctt 23914373  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 2838818 - 2838884
Alignment:
Q  121 taaaaatagggtaaggctgcatacaatacaacaaaaatggtaggctcccttttcggaccgtgcgtatgc 189  Q
    |||||| ||||||||||||| ||||||||| |  ||||||| || |||||| ||||||| |||||||||    
T  2838818 taaaaacagggtaaggctgcgtacaatacacc--aaatggtgggatcccttctcggaccctgcgtatgc 2838884  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 45139566 - 45139533
Alignment:
Q  128 agggtaaggctgcatacaatacaacaaaaatggt 161  Q
    ||||||||||||||||||||||| ||||||||||    
T  45139566 agggtaaggctgcatacaatacaccaaaaatggt 45139533  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 191
Target Start/End: Complemental strand, 45786310 - 45786241
Alignment:
Q  122 aaaaatagggtaaggctgcatacaatacaacaaaaatggtaggctcccttttcggaccgtgcgtatgctg 191  Q
    ||||| ||||||||||||| ||||||||| |||||||||| ||  |||||  |||||| |||| ||||||    
T  45786310 aaaaacagggtaaggctgcgtacaatacaccaaaaatggtgggaccccttcccggaccctgcgaatgctg 45786241  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 31831261 - 31831293
Alignment:
Q  123 aaaatagggtaaggctgcatacaatacaacaaa 155  Q
    |||||||||||||||||||||||||||| ||||    
T  31831261 aaaatagggtaaggctgcatacaatacaccaaa 31831293  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 150
Target Start/End: Complemental strand, 45948932 - 45948904
Alignment:
Q  122 aaaaatagggtaaggctgcatacaataca 150  Q
    |||||||||||||||||||||||||||||    
T  45948932 aaaaatagggtaaggctgcatacaataca 45948904  T

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