View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4236_high_3 (Length: 494)
Name: NF4236_high_3
Description: NF4236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4236_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 435; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Complemental strand, 9335064 - 9334591
Alignment:
| Q |
1 |
ttcttatatatgtagatgtttagaggcagcaaaccttcgtagacccaaaaagaataataagagctatggttctttgattctttcttcattacaatctttc |
100 |
Q |
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| T |
9335064 |
ttcttatatatgtagatgtttagaggcagcaaaccttcgtagacccaaaaagaataataagagctatggttctttgattctttcttcattacaatctttc |
9334965 |
T |
|
| Q |
101 |
taccgagtatcttaaaactgttatttaccaaaccttatgatgccatttgagagagatattttttggaacataattagcccatctattgtctaataatatc |
200 |
Q |
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| T |
9334964 |
taccgagtatcttaaaactgttatttaccaaaccttatgatgccatttgagagagatattttttggaacataattagcccatctattgtctaataatatc |
9334865 |
T |
|
| Q |
201 |
aatgtttggaatgctaggttctctatagtttgttttcgagggcatgatatatttaactatgatagcaaactcttgttttttgttttccttattagaaagg |
300 |
Q |
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| T |
9334864 |
aatgtttggaatgctagtttctgtatagtttgttttcgagggcatgatatatgtaactatgatagcaaacttttgttttttgttttccttattagaaagg |
9334765 |
T |
|
| Q |
301 |
acagtgtgaaaagtgcagttctgagtaacttatctatgacttatctgtcctctttgtttgtcgtttactttgattaggttttgatagttcatcctttatt |
400 |
Q |
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| T |
9334764 |
acattgtgaaaagtgcagttctgagtaacttatctatgacttatctgtcctctttgtttgtcgtttactttgattaggttttgatagttcatcctttatt |
9334665 |
T |
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| Q |
401 |
acatctattttgaagttttcttcattgtgcataaatcatatactacttattacttggtatgtaattctcactattag |
477 |
Q |
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| T |
9334664 |
acatctattttgaagttttcttcattgtgcataaatcata---tacgtattacttggtgtgtaattctcactattag |
9334591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 403 - 475
Target Start/End: Complemental strand, 9329241 - 9329172
Alignment:
| Q |
403 |
atctattttgaagttttcttcattgtgcataaatcatatactacttattacttggtatgtaattctcactatt |
475 |
Q |
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| T |
9329241 |
atctattttgaagttttcttcattgtgcataaatcata---tacttattatttggtgtgtaattctcactatt |
9329172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 9356777 - 9356695
Alignment:
| Q |
19 |
tttagaggcagcaaaccttcgtagacccaaaaagaataataagagctatggttctttgattctttcttcattacaatctttct |
101 |
Q |
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| T |
9356777 |
tttagaggcaacaaaccttctaaaacttgaaaagtaaaataagagttatgcttctttgattctttctccattacaatctttct |
9356695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 400
Target Start/End: Complemental strand, 9394393 - 9394298
Alignment:
| Q |
305 |
tgtgaaaagtgcagttctgagtaacttatctatgactt-atctgtcctctttgtttgtcgtttactttgattaggttttgatagttcatcctttatt |
400 |
Q |
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| T |
9394393 |
tgtgaaaaatgctgttctgagtaactt-tctatggtttgatctgtcttctttgtttcttgtttactaagattcggttttgaaacttcatcctttatt |
9394298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 389
Target Start/End: Complemental strand, 38413941 - 38413865
Alignment:
| Q |
314 |
tgcagttctgagtaacttatctatgacttat-ctgtcctctttgtttgtcgtttactttgattaggttttgatagtt |
389 |
Q |
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| T |
38413941 |
tgcagttttgaataacttatctatgaccgattccgtcctctttgtttcttgtttacttagattgagttttgatagtt |
38413865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 328
Target Start/End: Complemental strand, 4432989 - 4432913
Alignment:
| Q |
253 |
ttaactatgatagcaaactcttgtttt-ttgttttccttattagaaaggacagtgtgaaaagtgcagttctgagtaa |
328 |
Q |
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|||||||||| ||||||||||| ||| |||||| | ||||||||| |||| |||||||| ||| ||||||||||| |
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| T |
4432989 |
ttaactatgaatgcaaactcttggtttcttgtttgctttattagaactgacattgtgaaaaatgccgttctgagtaa |
4432913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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