View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4236_high_7 (Length: 334)
Name: NF4236_high_7
Description: NF4236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4236_high_7 |
 | |
|
| [»] scaffold1983 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 11 - 317
Target Start/End: Complemental strand, 40721962 - 40721656
Alignment:
| Q |
11 |
cagagaaaatgcataagtttaatgaagaaaaaagagaaaataagtgagagaaaatctctagattcattcaactgaaaataatttgttacaacatagtaat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
40721962 |
cagagaaaatgcataagtttaatgaagaaaaaagagaaaataagtgagagaaaatctctagattcattcaactgaaaagaatttgttacaacatagttat |
40721863 |
T |
|
| Q |
111 |
atatagctgcatataatcttaactaactgtaactaactattagcaaggattagaatcatatagactacagagtaagataacatagtaaagttttatggaa |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40721862 |
atatagctgcatataatcttaactaactgtaactaactattagcaaggattagaatcatatagactatagagtaagataacatagtaaagttttatggaa |
40721763 |
T |
|
| Q |
211 |
tggcaagataacatgatgcgcaagctatctgttattacaagtaatcacaccgcttaacaatttgatcgtgaaatgtcgcacaaccatgcacttgcattgg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40721762 |
tggcaagataacatgatgcgcaagctatctgttattacaagtaatcacaccgcttaacaatttgatcgtgaaatgtcgcacaaccatgcacttgcattgg |
40721663 |
T |
|
| Q |
311 |
attctct |
317 |
Q |
| |
|
||||||| |
|
|
| T |
40721662 |
attctct |
40721656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 56 - 260
Target Start/End: Original strand, 30430940 - 30431135
Alignment:
| Q |
56 |
gagagaaaatctctagattcattcaactgaaaataatttgttacaacatagtaatatatagctgcatataatcttaactaactgtaactaactattagca |
155 |
Q |
| |
|
|||| ||||||||||||||||||||||||| | | ||||||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||||| |
|
|
| T |
30430940 |
gagataaaatctctagattcattcaactgagatgagtttgttacaacatagctatatatagctgaatttaatcctaactaactgtaactaactattagct |
30431039 |
T |
|
| Q |
156 |
aggattagaatcatataga-ctacagagtaagataacatagtaaagttttatggaatggcaagataacatgatgcgcaagctatctgttattacaagtaa |
254 |
Q |
| |
|
||||||||||||||| ||| || ||| |||||||||||||||| ||||| |||||||||| || |||||||||||||||||| || || ||| |
|
|
| T |
30431040 |
aggattagaatcatagagagct----agt------acatagtaaagttttagggaattgcaagataacttgctgcgcaagctatctgttagtagaaataa |
30431129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 30718669 - 30718587
Alignment:
| Q |
90 |
aatttgttacaacatag-taatatatagctgcatataatcttaactaactgtaactaactattagcaaggattagaatcatat |
171 |
Q |
| |
|
|||| ||||||||| || ||||||| ||||| |||| ||| ||||||||| |||| |||||||| | |||||||||||||||| |
|
|
| T |
30718669 |
aattggttacaacaaagctaatataaagctgtatatgatcctaactaactctaacaaactattatctaggattagaatcatat |
30718587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 30718573 - 30718497
Alignment:
| Q |
194 |
agtaaagttttatggaatggcaagataacatgatgcgcaagctatctgttattacaagtaatcacaccgcttaacaa |
270 |
Q |
| |
|
||||||| | |||||||||||| |||| || |||||||||||||| |||||||||||||||||| | ||||||| |
|
|
| T |
30718573 |
agtaaagatctatggaatggcagagtaacctgctgcgcaagctatctaatattacaagtaatcacacagtttaacaa |
30718497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 30054905 - 30054971
Alignment:
| Q |
194 |
agtaaagttttatggaatggcaagataacatgatgcgcaagctatctgttattacaagtaatcacac |
260 |
Q |
| |
|
||||||| | |||||||||||| ||| ||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
30054905 |
agtaaagatctatggaatggcagagtaatatgctgcgcaagctatctaatattacaagtaatcacac |
30054971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 30682317 - 30682251
Alignment:
| Q |
194 |
agtaaagttttatggaatggcaagataacatgatgcgcaagctatctgttattacaagtaatcacac |
260 |
Q |
| |
|
||||||| | |||||||||||| |||| || |||||||||||||| |||||||||||||||||| |
|
|
| T |
30682317 |
agtaaagatctatggaatggcagagtaacttgctgcgcaagctatctaatattacaagtaatcacac |
30682251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 30682413 - 30682331
Alignment:
| Q |
90 |
aatttgttacaacatag-taatatatagctgcatataatcttaactaactgtaactaactattagcaaggattagaatcatat |
171 |
Q |
| |
|
|||| ||||||||| || ||||||| |||| |||| ||| ||||||||| |||| |||||||| | |||||||||||||||| |
|
|
| T |
30682413 |
aattggttacaacaaagctaatataaagctctatatgatcctaactaactctaacaaactattatctaggattagaatcatat |
30682331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1983 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold1983
Description:
Target: scaffold1983; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 55 - 169
Target Start/End: Complemental strand, 646 - 532
Alignment:
| Q |
55 |
tgagagaaaatctctagattcattcaactgaaaataatttgttacaacatagtaatatatagctgcatataatcttaactaactgtaactaactattagc |
154 |
Q |
| |
|
||||||||||||| | |||||||||||||||||| | ||||||||||||||| |||||||||| ||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
646 |
tgagagaaaatctattgattcattcaactgaaaagagtttgttacaacatagctatatatagcttcatataatcataactaattgtaactaactattagc |
547 |
T |
|
| Q |
155 |
aaggattagaatcat |
169 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
546 |
taggactagaatcat |
532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 56 - 259
Target Start/End: Original strand, 6415383 - 6415569
Alignment:
| Q |
56 |
gagagaaaatctctagattcattcaactgaaaataatttgttacaacatagtaatatatagctgcatataatcttaactaactgtaactaactattagca |
155 |
Q |
| |
|
||||||||||||||||||| ||| || ||| | | ||||||| ||||||| ||||||||||| |||||||| ||||||||| || ||||| |
|
|
| T |
6415383 |
gagagaaaatctctagatttattgaattgatatgagtttgttaaaacatagctatatatagctgtatataatcctaactaactata--------ttagct |
6415474 |
T |
|
| Q |
156 |
aggattagaatcatataga-ctacagagtaagataacatagtaaagttttatggaatggcaagataacatgatgcgcaagctatctgttattacaagtaa |
254 |
Q |
| |
|
||||||||||||||||||| ||| ||| |||||||||||| |||||||||||||| |||| || |||||||||||||| ||||||||||||| |
|
|
| T |
6415475 |
aggattagaatcatatagagcta----gta------catagtaaagttctatggaatggcaaggtaacttgctgcgcaagctatctattattacaagtaa |
6415564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 269
Target Start/End: Original strand, 29155973 - 29156167
Alignment:
| Q |
67 |
tctagattcattcaactgaaaataatttgttacaa-catagtaatatatagctgcatataatcttaactaactgtaactaactattagcaaggattagaa |
165 |
Q |
| |
|
|||||||||||| || ||||| | |||||||||| ||||| ||||||||||| |||||||| ||| ||| | ||||||||| ||| | |||||||||| |
|
|
| T |
29155973 |
tctagattcattgaattgaaatgagtttgttacaatcatagctatatatagctgtatataatcctaagtaagtctaactaactcttatctaggattagaa |
29156072 |
T |
|
| Q |
166 |
tcatatagactacagagtaagataacatagtaaagttttatggaatggcaagataacatgatgcgcaagctatctgttattacaagtaatcacaccgctt |
265 |
Q |
| |
|
|||||| || | | |||| |||||||||| | |||||||||||| |||| || |||||||||||||| ||||||||||||||||||| | || |
|
|
| T |
29156073 |
tcatat-ga-tgct-agta------catagtaaagatctatggaatggcagagtaacttgctgcgcaagctatctattattacaagtaatcacacagttt |
29156163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University