View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4236_high_8 (Length: 296)
Name: NF4236_high_8
Description: NF4236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4236_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 50808505 - 50808239
Alignment:
| Q |
18 |
aagtttttgtaccaggttgagtgacacagtctagagtgagataggcaaagcatatgaaaaaacaacgtgagtagttaactctttcttttgttggatagat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50808505 |
aagtttttgtaccaggttgagtgacacagtctagagtgagataggcaaagcatatgaaaaaacaacgtgagtagttaactctttcttttgttggatagat |
50808406 |
T |
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| Q |
118 |
atatgttaatttccaaggatctaaccctgaacttcatacttagaactccatcgatggatatcaaactttttgttcaattttgtagctttgttgccctgtt |
217 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50808405 |
atatgttagtttccaaggatctaaccctgaacttcatacttagaactccatcgatggatatcaaactttttgttcaattttgtagctttgttgccctgtt |
50808306 |
T |
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| Q |
218 |
tgaaattaaagtagaataatttgaaaaaaggtttgtgctttgttacattgtttgttagcctttgctt |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50808305 |
tgaaattaaagtagaataatttgaaaaaaggtttgtgctttgttacattgtttgttagcctttgctt |
50808239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 50867358 - 50867624
Alignment:
| Q |
18 |
aagtttttgtaccaggttgagtgacacagtctagagtgagataggcaaagcatatgaaaaaacaacgtgagtagttaactctttcttttgttggatagat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50867358 |
aagtttttgtaccaggttgagtgacacagtctagagtgagataggcaaagcatatgaaaaaacaacgtgagtagttaactctttcttttgttggatagat |
50867457 |
T |
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| Q |
118 |
atatgttaatttccaaggatctaaccctgaacttcatacttagaactccatcgatggatatcaaactttttgttcaattttgtagctttgttgccctgtt |
217 |
Q |
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| T |
50867458 |
atatgttagtttccaaggatctaaccctgaacttcatacttagaactccatcgatggatatcaaactttttgttcaattttgtagctttgttgccctgtt |
50867557 |
T |
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| Q |
218 |
tgaaattaaagtagaataatttgaaaaaaggtttgtgctttgttacattgtttgttagcctttgctt |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50867558 |
tgaaattaaagtagaataatttgaaaaaaggtttgtgctttgttacattgtttgttagcctttgctt |
50867624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 19054912 - 19055178
Alignment:
| Q |
18 |
aagtttttgtaccaggttgagtgacacagtctagagtgagataggcaaagcatatgaaaaaacaacgtgagtagttaactctttcttttgttggatagat |
117 |
Q |
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|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
19054912 |
aagtttctgtaccaggttgagtgacacagtctcaagtgagataggcaaagcatatgaaaaaacaacgtgagtagttaagtctttctttttttggatagat |
19055011 |
T |
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| Q |
118 |
atatgttaatttccaaggatctaaccctgaacttcatacttagaactccatcgatggatatcaaactttttgttcaattttgtagctttgttgccctgtt |
217 |
Q |
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|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19055012 |
atatgttagtttccaaggatcaaaccctgaacttcatacttagaactccatcgatggatatcaaactttttgttcaattttgtagctttgttgccctgtt |
19055111 |
T |
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| Q |
218 |
tgaaattaaagtagaataatttgaaaaaaggtttgtgctttgttacattgtttgttagcctttgctt |
284 |
Q |
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| T |
19055112 |
tgaaattaaagtagaataatttgaaaaaaggtttgtgctttgttacattgtttgttagcctttgctt |
19055178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 31109923 - 31109838
Alignment:
| Q |
18 |
aagtttttgtaccaggttgagtgacacagtctagagtgagataggcaaagcatatgaaaaaacaacgtgagtagttaactctttct |
103 |
Q |
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|||||| ||||||| ||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
31109923 |
aagtttctgtaccaagttgagtgacacagtctcaagtgagatcggcaaagcatatggaaaaacaacgtgagtagttaaccctttct |
31109838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 108 - 173
Target Start/End: Complemental strand, 31109800 - 31109735
Alignment:
| Q |
108 |
ttggatagatatatgttaatttccaaggatctaaccctgaacttcatacttagaactccatcgatg |
173 |
Q |
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|||||||||||||||| | |||||||||||| ||||||||| ||| ||||||||||||| |||||| |
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| T |
31109800 |
ttggatagatatatgtcagtttccaaggatcaaaccctgaagttcctacttagaactccttcgatg |
31109735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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