View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4236_low_12 (Length: 248)
Name: NF4236_low_12
Description: NF4236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4236_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 4075542 - 4075313
Alignment:
| Q |
1 |
ttgttacaaagaaagagatcaaattacagaagatggatatagtggaaatggttctgttcctaaaatgatgcaagtggttgaaaatgttctagaagatttg |
100 |
Q |
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|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
4075542 |
ttgttacaaagaaagagatcaaattaaagaagagggatatagtggaaatggttctgttcctaaaatgatgcaagtggtggaaaatgttctacaagatttg |
4075443 |
T |
|
| Q |
101 |
aaaactagaggtttgaatgttcaattgcttaacatcacacagctatcagagtacagaaaagaaggccatccatctatctataggaagcaatgggagcctt |
200 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4075442 |
aaaagaagaggtttgaatgttcaattgcttaacataacacaactctcagagtacagaaaagaaggtcatccatctatctataggaagcaatgggagcctc |
4075343 |
T |
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| Q |
201 |
taacagaagagcaaatatcaaatccaaaat |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
4075342 |
taacagaagagcaaatatcaaatccaaaat |
4075313 |
T |
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Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 59 - 228
Target Start/End: Original strand, 25824676 - 25824845
Alignment:
| Q |
59 |
cctaaaatgatgcaagtggttgaaaatgttctagaagatttgaaaactagaggtttgaatgttcaattgcttaacatcacacagctatcagagtacagaa |
158 |
Q |
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|||||||||||||||||||| || || || || || ||||||||||| | |||||| ||||||||| |||||||||||||||| || ||||| ||||||| |
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| T |
25824676 |
cctaaaatgatgcaagtggtggagaaggtgcttgatgatttgaaaacaaaaggtttaaatgttcaaatgcttaacatcacacaactctcagaatacagaa |
25824775 |
T |
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| Q |
159 |
aagaaggccatccatctatctataggaagcaatgggagcctttaacagaagagcaaatatcaaatccaaa |
228 |
Q |
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||||||| || || |||||||||||||| || ||||| ||| |||| |||| || |||||||||||||| |
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| T |
25824776 |
aagaaggtcacccttctatctataggaaacagtgggaacctctaactcaagaacagatatcaaatccaaa |
25824845 |
T |
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