View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4236_low_2 (Length: 517)

Name: NF4236_low_2
Description: NF4236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4236_low_2
NF4236_low_2
[»] chr3 (9 HSPs)
chr3 (288-474)||(9335420-9335606)
chr3 (1-197)||(9335082-9335291)
chr3 (1-192)||(9329276-9329480)
chr3 (286-394)||(9405755-9405864)
chr3 (291-394)||(9424007-9424111)
chr3 (74-122)||(9339901-9339949)
chr3 (331-425)||(9394470-9394565)
chr3 (73-113)||(8060940-8060980)
chr3 (346-394)||(9696977-9697026)
[»] chr1 (2 HSPs)
chr1 (298-375)||(4426670-4426746)
chr1 (74-113)||(230969-231008)
[»] chr6 (1 HSPs)
chr6 (82-122)||(213802-213842)


Alignment Details
Target: chr3 (Bit Score: 155; Significance: 5e-82; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 288 - 474
Target Start/End: Original strand, 9335420 - 9335606
Alignment:
Q  288 tctcaattcaaaagatagaaaggaacatttttaggtgacacttataccatttggtcagtttcttaaactaatgtgatttgctctaactgcaaaactagtt 387  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  9335420 tctcaattcaaaagatagaaaggaacatttttagatgacactgataccatttggtcagtttcttaaactaaagtgatttgctctaactgcaaaacaagtt 9335519  T
Q  388 gaaatatgacagggaatgaattcaacgaacatgccaaataattaggagaaagactaaagatcaacttcaacacatataatgaaacaa 474  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  9335520 gaaatatgacagggaatgaattcaactgacatgccaaataattaggagaaacacttaagatcaacttcaacacatataatgaaacaa 9335606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 9335082 - 9335291
Alignment:
Q  1 aaaaagagttattgttagacatataagtgtatccgatcaactaagtgtcaaatttacagcaccataattattcataatacaagtggtcaacatcaaatca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9335082 aaaaagagttattgttagacatataagtgtatccgatcaactaagtttcaaatttacagcaccataattattcataatacaagtggtcaacatcaaatca 9335181  T
Q  101 aaataacataacataacaaaccaaattcaacca-------------cttttcatatgaatatgtaattaagaattaggagttcattgctaaacatgttgt 187  Q
    |||||||||||||||||||||||||||||||||             |||||||| |||||||||||||||||||||| | ||||||||||||||||||||    
T  9335182 aaataacataacataacaaaccaaattcaaccactttttccagcatcttttcatctgaatatgtaattaagaattagaaattcattgctaaacatgttgt 9335281  T
Q  188 ctggaaaagt 197  Q
    ||||||||||    
T  9335282 ctggaaaagt 9335291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 9329276 - 9329480
Alignment:
Q  1 aaaaagagttattgttagacatataagtgtatccgatcaactaagtgtcaaatttacagcaccataattattcataatacaagtggtcaacatcaaatca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9329276 aaaaagagttattgttagacatataagtgtatccgatcaactaagtttcaaatttacagcaccataattattcataatacaagtggtcaacatcaaatca 9329375  T
Q  101 aaataacataacataacaaaccaaattcaacca-------------cttttcatatgaatatgtaattaagaattaggagttcattgctaaacatgttgt 187  Q
    |||||||||||||||||||||||||||||||||             |||||||| ||||||||||||||||||||| ||||||| |||||||||||||||    
T  9329376 aaataacataacataacaaaccaaattcaaccacttttcccagcatcttttcatttgaatatgtaattaagaattatgagttcaatgctaaacatgttgt 9329475  T
Q  188 ctgga 192  Q
    |||||    
T  9329476 ctgga 9329480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 286 - 394
Target Start/End: Original strand, 9405755 - 9405864
Alignment:
Q  286 aatctcaattcaaaagatagaaaggaacatttttaggtgacacttataccatttggtcagtttcttaaactaatgtgatttgctctaactgca-aaacta 384  Q
    |||| |||||||||||||||  ||||  ||||||||| |||||| ||||||||||| |||||||||||| || | | |||| |||||| |||| |||||     
T  9405755 aatcacaattcaaaagatagcgaggattatttttaggagacactaataccatttggccagtttcttaaattatttttattttctctaattgcataaactt 9405854  T
Q  385 gttgaaatat 394  Q
    ||||||||||    
T  9405855 gttgaaatat 9405864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 291 - 394
Target Start/End: Original strand, 9424007 - 9424111
Alignment:
Q  291 caattcaaaagatagaaaggaacatttttaggtgacacttataccatttggtcagtttcttaaactaatgtgatttgctctaactgca-aaactagttga 389  Q
    |||||||||||||||  ||||  ||||||||| |||||| ||||||||||| |||||||||||| || | | |||| |||||| |||| ||||| |||||    
T  9424007 caattcaaaagatagcgaggattatttttaggagacactaataccatttggccagtttcttaaattatttttattttctctaattgcataaacttgttga 9424106  T
Q  390 aatat 394  Q
    |||||    
T  9424107 aatat 9424111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 9339901 - 9339949
Alignment:
Q  74 ataatacaagtggtcaacatcaaatcaaaataacataacataacaaacc 122  Q
    ||||| |||| |||||||||||||||||||||||||| |||||||||||    
T  9339901 ataatgcaagaggtcaacatcaaatcaaaataacatagcataacaaacc 9339949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 331 - 425
Target Start/End: Original strand, 9394470 - 9394565
Alignment:
Q  331 ataccatttggtcagtttcttaaactaatgtgatttgctctaactgca-aaactagttgaaatatgacagggaatgaattcaacgaacatgccaaa 425  Q
    ||||||||||| |||||||||||| || | |||||| |||||| |||| ||||| |||||||||||  ||||||| |||||||  | |||||||||    
T  9394470 ataccatttggccagtttcttaaattattttgatttcctctaattgcataaacttgttgaaatatgggagggaataaattcaattaccatgccaaa 9394565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 8060940 - 8060980
Alignment:
Q  73 cataatacaagtggtcaacatcaaatcaaaataacataaca 113  Q
    |||||||||||| ||||||||||||||||||||||| ||||    
T  8060940 cataatacaagtagtcaacatcaaatcaaaataacagaaca 8060980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 394
Target Start/End: Complemental strand, 9697026 - 9696977
Alignment:
Q  346 tttcttaaactaatgtgatttgctctaactgca-aaactagttgaaatat 394  Q
    |||||||||||| | |||||||||||||||||| || |||||||||||||    
T  9697026 tttcttaaactattttgatttgctctaactgcataagctagttgaaatat 9696977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 298 - 375
Target Start/End: Original strand, 4426670 - 4426746
Alignment:
Q  298 aaagatagaaaggaacatttttaggtgacacttataccatttggtcagtttcttaaactaatgtgatttgctctaact 375  Q
    |||||||| |||| ||||||||| | |||||| ||||||||||| ||||||| ||||||| | ||||||||| |||||    
T  4426670 aaagatagcaagggacatttttaagggacactgataccatttggccagtttc-taaactattttgatttgctttaact 4426746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 113
Target Start/End: Original strand, 230969 - 231008
Alignment:
Q  74 ataatacaagtggtcaacatcaaatcaaaataacataaca 113  Q
    ||||| ||||| ||||||||||||||||||||||||||||    
T  230969 ataatgcaagtagtcaacatcaaatcaaaataacataaca 231008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 213842 - 213802
Alignment:
Q  82 agtggtcaacatcaaatcaaaataacataacataacaaacc 122  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  213842 agtggtcaacatcgaatcaaaataacataacataaaaaacc 213802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University