View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4236_low_4 (Length: 431)
Name: NF4236_low_4
Description: NF4236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4236_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 427
Target Start/End: Original strand, 45707010 - 45707412
Alignment:
| Q |
18 |
aggtaagggggtgagcgatatcgatctgaaatcatagacatcgtgtttgcaggacgagcggggacagtttaattgcctattttgtccggggcaaagctaa |
117 |
Q |
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| T |
45707010 |
aggtaagggggtgagcgatatcgatctgaaatcatagacatagtgtttgcaggacgagcagggacagtttaattgcctattttgtccggggcaaagctaa |
45707109 |
T |
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| Q |
118 |
ttatcaaatcccattgaaagtaattaatgaactaaatgattaaacaactaagtgagcttaaaataaaattagaaatgatattaaggtgatgtgtgcttta |
217 |
Q |
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| T |
45707110 |
ttatcaaatcccattgaaagtaattaatgaactaaatgattaaacaactaagtgagcttaaaataaaattagaaatgatattaaggtgatgtgtgcttta |
45707209 |
T |
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| Q |
218 |
ctttttccctcactgtgcaattaaattttattctcgaatacatggatatgtgaattacctgaagactgaagtccttgctaagtgaggcaaatcaaatgtt |
317 |
Q |
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| T |
45707210 |
ctttttccctcactatgcaattaaattttattctcgaatacatggatatgtgaattac-------ctgaagtccttgctaagtgaggcaaatcaaatgtt |
45707302 |
T |
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| Q |
318 |
ttgttgttagttatgatttcgctgtgagtttctaattaatgcatttgtgactatttgttacgaattgtctccagttatcagtaaaccgttgtgtactttt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45707303 |
ttgttgttagttatgatttcgctgtgagtttctaattaatgcatttgtgactatttgttacgaattgtctccagttatcagtaaaccgttgtgtactttt |
45707402 |
T |
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| Q |
418 |
tcatctcact |
427 |
Q |
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|||| ||||| |
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| T |
45707403 |
tcatgtcact |
45707412 |
T |
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