View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4236_low_5 (Length: 400)
Name: NF4236_low_5
Description: NF4236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4236_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 385
Target Start/End: Original strand, 6916015 - 6916378
Alignment:
| Q |
19 |
aacacaatacttcaaacaccaatttcagcccattaattaaactccataatcagattcacaagtaaaacagaggatatctttgtgcagtgtcatgtcaagt |
118 |
Q |
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| T |
6916015 |
aacacaatacttcaaacaccaatttcagcccattaattaaactccataatcagattcacaagtaaaacagaggatatctttgtgcagtgtcatgtcaagt |
6916114 |
T |
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| Q |
119 |
agcaacaacaaacgcacactattgttgacaagtaaaaccgtattcttttagttcatatctttgtgtttcatttctacattcacatgtcacaccatctgta |
218 |
Q |
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| T |
6916115 |
agcaacaacaaacgcacactattgttgacaagtaaaaccgtattctttgagttcatatc--tgtgtttcatttctacattcacatgtcacaccatctgta |
6916212 |
T |
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| Q |
219 |
tttgatcttaattttacttccttgtttcaatacattatctactacaacacacagagtaaaccttcaaaatcatcaccctacaacccatcaaataannnnn |
318 |
Q |
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| T |
6916213 |
tttgatcttaattttacttccttgtttcaatacattatctactacaacacacagagtaaaccttcaaaatcatcaccctacaacccatcaaataa-tttt |
6916311 |
T |
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| Q |
319 |
nncctgttttcacattaacttagggtcttgagctaacaatatactcaaacctaaccaattatgacat |
385 |
Q |
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| T |
6916312 |
ttcctgttttcacattaacttaggatcttgagctaacaatatactcaaagctaactaattatgacat |
6916378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 6916401 - 6916453
Alignment:
| Q |
27 |
acttcaaacaccaatttcagcccattaattaaactccataatcagattcacaa |
79 |
Q |
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| T |
6916401 |
acttcaaacaccaattttagctcattaatcaaactccataattacattcacaa |
6916453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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