View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4236_low_8 (Length: 331)
Name: NF4236_low_8
Description: NF4236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4236_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 134 - 320
Target Start/End: Complemental strand, 376125 - 375939
Alignment:
| Q |
134 |
ccataaaagggtactggtgcttgattagttggctgctttagagggcaagtggaaataggaagcacagggagattttggcaattgcacatttcaatcatat |
233 |
Q |
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| T |
376125 |
ccataaaagggtactggtgcttgattagttggctgctttagagggcaagtggaaataggaagcacagggagattttggcaattgcacatttcaatcatat |
376026 |
T |
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| Q |
234 |
atccatctggatcatgaaagaacaattgatcaacctgaattccaccatcctccacaactgctgttttatactcgatattcatctcat |
320 |
Q |
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| T |
376025 |
atccatctggatcatgaaagaacaattgatcaaccttaattccaccatcctccacaactgctgttttatactcaatattcatttcat |
375939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 376245 - 376153
Alignment:
| Q |
18 |
aaattaagcttttcaatttcattgtagtaatcattggattaaatttaaacgaaacaaattaaagaaattaattaattaggagagttgagaagaaaac |
114 |
Q |
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| T |
376245 |
aaattaagcttttcaatttcattgtagtaatcattggattaaatttaaacgaaaca----aaagaaattaattaattaggagagttgagaagaaaac |
376153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 212 - 277
Target Start/End: Original strand, 44544811 - 44544876
Alignment:
| Q |
212 |
caattgcacatttcaatcatatatccatctggatcatgaaagaacaattgatcaacctgaattcca |
277 |
Q |
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| T |
44544811 |
caattgcatatttcaatcataaatccatctgggtcatgaaaaaacaattgatccacttgaattcca |
44544876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 212 - 277
Target Start/End: Original strand, 44555453 - 44555518
Alignment:
| Q |
212 |
caattgcacatttcaatcatatatccatctggatcatgaaagaacaattgatcaacctgaattcca |
277 |
Q |
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| T |
44555453 |
caattgcatatttcaatcataaatccatctgggtcatgaaaaaacaattgatccacttgaattcca |
44555518 |
T |
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