View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4237_high_11 (Length: 245)
Name: NF4237_high_11
Description: NF4237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4237_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 101 - 228
Target Start/End: Complemental strand, 33552704 - 33552578
Alignment:
| Q |
101 |
ataaagtgtgacattactctgctcaattagatcctttgtgttttagatcaatactgcataaatatgaaacttcatggcgagattaagacaatgcagtgag |
200 |
Q |
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| T |
33552704 |
ataaagtgtgacattactctcctcaattagatc-tttatgttttagatcaatactgcataaatatgaaacttcatggcgagattaagacaatgcagtgag |
33552606 |
T |
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| Q |
201 |
tttgaataacaaacaagctccgtaattt |
228 |
Q |
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| T |
33552605 |
tttgaataacaaacaagctccgtaattt |
33552578 |
T |
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Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 33553122 - 33553040
Alignment:
| Q |
11 |
cacagagaagcatgatagcaatgttcaatattcaaggatgttctaagattgaccataaatccgtacattggtttcttctctta |
93 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33553122 |
cacagagaagcatgatagcaatgttcaatattcaaggatgttctaagattgaccataaatccgtacattggtttcttctctta |
33553040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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