View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4237_high_6 (Length: 311)
Name: NF4237_high_6
Description: NF4237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4237_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 15 - 290
Target Start/End: Original strand, 26058164 - 26058439
Alignment:
| Q |
15 |
aaataccacgatatatataattaggaaaatacggtagtgccctcatttggataggtagatgtttcactagctaatgcagaaggcaaggtagaaaatgtga |
114 |
Q |
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| T |
26058164 |
aaataccacgatatatataattaggaaaatacgttagtaccctcatttggataggtagatgtttcactagctaatgcagaaggcaaggtagaaaatgtga |
26058263 |
T |
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| Q |
115 |
tagttacgatggacaacttcgcatttccaacaagcacaacagtgatggagataagagaattttacgagtgttgctgatcaaattggaggacaattctccg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
26058264 |
tagttacgatggacaacttcgcatttccaacaagcacaacagtgatggagatgagagaactttacgagtgttgctgatcaaattggaggacaattctccg |
26058363 |
T |
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| Q |
215 |
atgctgaatgttgcaggataaggtaagaaacccacattcaaatgtctaataaaagaacaaaataacaaatgtgaac |
290 |
Q |
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| T |
26058364 |
atgctgaatgttgcaggataaggtaagaaacccacattcaaatgtctaataaaagaacaaaataacaaaggtgaac |
26058439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 26081832 - 26081880
Alignment:
| Q |
15 |
aaataccacgatatatataattaggaaaatacggtagtgccctcatttg |
63 |
Q |
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|||||||| |||| |||||||||||||||||| |||||||||||||| |
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| T |
26081832 |
aaataccatgataattataattaggaaaatacgacagtgccctcatttg |
26081880 |
T |
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