View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4237_high_7 (Length: 293)

Name: NF4237_high_7
Description: NF4237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4237_high_7
NF4237_high_7
[»] chr7 (5 HSPs)
chr7 (1-292)||(6081498-6081789)
chr7 (1-123)||(15567336-15567456)
chr7 (39-123)||(15432369-15432455)
chr7 (39-123)||(15490725-15490808)
chr7 (39-84)||(16945048-16945093)
[»] chr5 (2 HSPs)
chr5 (1-292)||(29526876-29527167)
chr5 (2-286)||(39702444-39702728)
[»] chr1 (2 HSPs)
chr1 (1-292)||(10582997-10583288)
chr1 (1-292)||(49122425-49122716)
[»] scaffold0227 (1 HSPs)
scaffold0227 (1-292)||(11373-11664)
[»] chr6 (1 HSPs)
chr6 (1-292)||(18132614-18132905)
[»] scaffold1195 (2 HSPs)
scaffold1195 (39-123)||(500-584)
scaffold1195 (11-60)||(1436-1485)


Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 6081789 - 6081498
Alignment:
Q  1 tttcttctgattgaaggctgaatgtgtgaggcgtcgatgactcccattccaatccagattcctcttcttcatcagatataggtagaacgtctctatactc 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6081789 tttcttctgattgaaggctgaatgtgtgaggcgtcgataactcccattccaatccagattcctcttcttcatcagatataggtagaacgtctctatactc 6081690  T
Q  101 tggcttaaaatgccaaagtagtgcaatgtgaaatgctcgccaactcgcatgcagatggcatcgactccaccactgccaccatacgagagcacggtttcgc 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6081689 tggcttaaaatgccaaagtagtgcaatgtgaaacgctcgccaactcgcatgcagatggcatcgactccaccactgccaccatacgagagcacggtttcgc 6081590  T
Q  201 aaggctttcatcgcctccagcaacttctcacccgcctgtgtgcccacgacatcaaaatgtttctcaatacaaatcaaccaccaataagcgtc 292  Q
    |||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6081589 aaggctttcaccgcctccagcaacttctcaccctcctgtgttcccacgacatcaaaatgtttctcaatacaaatcaaccaccaataagcgtc 6081498  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 15567456 - 15567336
Alignment:
Q  1 tttcttctgattgaaggctgaatgtgtgaggcgtcgatgactcccattccaatccagattcctcttcttcatcagatataggtagaacgtctctatactc 100  Q
    ||||||||  |||||||| |||||||||| ||||||||||||||||||||||| || |||||||||||||||| |||||||||| ||   ||||||||||    
T  15567456 tttcttctagttgaaggccgaatgtgtgaagcgtcgatgactcccattccaattcaaattcctcttcttcatctgatataggtaaaa--gctctatactc 15567359  T
Q  101 tggcttaaaatgccaaagtagtg 123  Q
    ||||| |||||||||||||||||    
T  15567358 tggctgaaaatgccaaagtagtg 15567336  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 15432455 - 15432369
Alignment:
Q  39 gactcccattccaatccagattcctcttcttcatcagatataggtagaac--gtctctatactctggcttaaaatgccaaagtagtg 123  Q
    |||| |||||||||| | |||||||||||||||||||||||||||| |||   ||||||| ||| ||||||||||||||||||||||    
T  15432455 gactaccattccaattccgattcctcttcttcatcagatataggtaaaacagctctctatcctcaggcttaaaatgccaaagtagtg 15432369  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 15490808 - 15490725
Alignment:
Q  39 gactcccattccaatccagattcctcttcttcatcagatataggtagaacgtctctatactctggcttaaaatgccaaagtagtg 123  Q
    |||| |||||||||| |||||||||||||||||||||||||||||| ||  | ||| | ||| ||||||||||||||||||||||    
T  15490808 gactaccattccaattcagattcctcttcttcatcagatataggtaaaagctatct-tcctcaggcttaaaatgccaaagtagtg 15490725  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 16945093 - 16945048
Alignment:
Q  39 gactcccattccaatccagattcctcttcttcatcagatataggta 84  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  16945093 gactcccattccaattcagattcctcttcttcatcagatataggta 16945048  T

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Target: chr5 (Bit Score: 268; Significance: 1e-150; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 29526876 - 29527167
Alignment:
Q  1 tttcttctgattgaaggctgaatgtgtgaggcgtcgatgactcccattccaatccagattcctcttcttcatcagatataggtagaacgtctctatactc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29526876 tttcttctgattgaaggctgaatgtgtgaggcgtcgatgactcccattccaatccagattcttcttcttcatcagatataggtagaacgtctctatactc 29526975  T
Q  101 tggcttaaaatgccaaagtagtgcaatgtgaaatgctcgccaactcgcatgcagatggcatcgactccaccactgccaccatacgagagcacggtttcgc 200  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29526976 tggcttaaaatgccaaagtagtgcaatgtgaaatgcttgccaactcgcatgcagatggcatcaactccaccactgccaccatacgagagcacggtttcgc 29527075  T
Q  201 aaggctttcatcgcctccagcaacttctcacccgcctgtgtgcccacgacatcaaaatgtttctcaatacaaatcaaccaccaataagcgtc 292  Q
    |||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29527076 aaggctttcaccgcctccagcaacttctcaccctcctgtgttcccacgacatcaaaatgtttctcaatacaaatcaaccaccaataagcgtc 29527167  T

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Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 2 - 286
Target Start/End: Original strand, 39702444 - 39702728
Alignment:
Q  2 ttcttctgattgaaggctgaatgtgtgaggcgtcgatgactcccattccaatccagattcctcttcttcatcagatataggtagaacgtctctatactct 101  Q
    ||||||||  ||||||||||| ||||||| |||| ||||||||||| ||||| |||||||||| |||||||||||||||||||||| |||||||||||||    
T  39702444 ttcttctggatgaaggctgaacgtgtgagacgtcaatgactcccataccaatgcagattcctcatcttcatcagatataggtagaatgtctctatactct 39702543  T
Q  102 ggcttaaaatgccaaagtagtgcaatgtgaaatgctcgccaactcgcatgcagatggcatcgactccaccactgccaccatacgagagcacggtttcgca 201  Q
    |||||||||||||||||||||||||  ||||| | ||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||| ||    
T  39702544 ggcttaaaatgccaaagtagtgcaacatgaaacgttcgccaactcgcatgtagatggcatcgactccaccacttccaccatatgagagcacggtttcaca 39702643  T
Q  202 aggctttcatcgcctccagcaacttctcacccgcctgtgtgcccacgacatcaaaatgtttctcaatacaaatcaaccaccaata 286  Q
    |  |||||| |||||||||||| ||||||||| || |||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  39702644 atactttcaccgcctccagcaatttctcaccctccggtgttcccacaacatcaaaatgtttctcaatacaaatcaaccaccaata 39702728  T

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Target: chr1 (Bit Score: 268; Significance: 1e-150; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 10583288 - 10582997
Alignment:
Q  1 tttcttctgattgaaggctgaatgtgtgaggcgtcgatgactcccattccaatccagattcctcttcttcatcagatataggtagaacgtctctatactc 100  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10583288 tttcttctgattgaaggctgaatgtgtgaggcgtcaataactcccattccaatccagattcctcttcttcatcagatataggtagaacgtctctatactc 10583189  T
Q  101 tggcttaaaatgccaaagtagtgcaatgtgaaatgctcgccaactcgcatgcagatggcatcgactccaccactgccaccatacgagagcacggtttcgc 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10583188 tggcttaaaatgccaaagtagtgcaatgtgaaacgctcgccaactcgcatgcagatggcatcgactccaccactgccaccatacgagagcacggtttcgc 10583089  T
Q  201 aaggctttcatcgcctccagcaacttctcacccgcctgtgtgcccacgacatcaaaatgtttctcaatacaaatcaaccaccaataagcgtc 292  Q
    |||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10583088 aaggctttcaccgcctccagcaacttctcaccctcctgtgttcccacgacatcaaaatgtttctcaatacaaatcaaccaccaataagcgtc 10582997  T

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Target: chr1; HSP #2
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 49122716 - 49122425
Alignment:
Q  1 tttcttctgattgaaggctgaatgtgtgaggcgtcgatgactcccattccaatccagattcctcttcttcatcagatataggtagaacgtctctatactc 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  49122716 tttcttctgattgaaggctgaatgtgtgaggcgtcgataactcccattccaatccagattcctcttcttcatctgatataggtagaacgtctctatactc 49122617  T
Q  101 tggcttaaaatgccaaagtagtgcaatgtgaaatgctcgccaactcgcatgcagatggcatcgactccaccactgccaccatacgagagcacggtttcgc 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49122616 tggcttaaaatgccaaagtagtgcaatgtgaaacgctcgccaactcgcatgcagatggcatcgactccaccactgccaccatacgagagcacggtttcgc 49122517  T
Q  201 aaggctttcatcgcctccagcaacttctcacccgcctgtgtgcccacgacatcaaaatgtttctcaatacaaatcaaccaccaataagcgtc 292  Q
    |||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49122516 aaggctttcaccgcctccagcaacttctcaccctcctgtgttcccacgacatcaaaatgtttctcaatacaaatcaaccaccaataagcgtc 49122425  T

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Target: scaffold0227 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 11664 - 11373
Alignment:
Q  1 tttcttctgattgaaggctgaatgtgtgaggcgtcgatgactcccattccaatccagattcctcttcttcatcagatataggtagaacgtctctatactc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11664 tttcttctgattgaaggctgaatgtgtgaggcgtcgatgactcccattccaatccagattcctcttcttcatcagatataggtagaacttctctatactc 11565  T
Q  101 tggcttaaaatgccaaagtagtgcaatgtgaaatgctcgccaactcgcatgcagatggcatcgactccaccactgccaccatacgagagcacggtttcgc 200  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  11564 tggcttaaaatgccaaagtagtgcaatgtgaaacgctcgccaactcgcatgcagatggcatcgactccaccactgccaccatacgagagcacagtttcac 11465  T
Q  201 aaggctttcatcgcctccagcaacttctcacccgcctgtgtgcccacgacatcaaaatgtttctcaatacaaatcaaccaccaataagcgtc 292  Q
    |||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11464 aaggctttcaccgcctccagcaacttctcaccctcctgtgttcccacgacatcaaaatgtttctcaatacaaatcaaccaccaataagcgtc 11373  T

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Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 18132614 - 18132905
Alignment:
Q  1 tttcttctgattgaaggctgaatgtgtgaggcgtcgatgactcccattccaatccagattcctcttcttcatcagatataggtagaacgtctctatactc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18132614 tttcttctgattgaaggctgaatgtgtgaggcgtcgatgactcccattccaatccagattcctcttcttcatcagatataggtagaacgtctctatactc 18132713  T
Q  101 tggcttaaaatgccaaagtagtgcaatgtgaaatgctcgccaactcgcatgcagatggcatcgactccaccactgccaccatacgagagcacggtttcgc 200  Q
     ||||||||||||||||| |||||||||||||| |||   | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18132714 cggcttaaaatgccaaagaagtgcaatgtgaaacgctttgccactcgcatgcagatgccatcgactccaccactgccaccatacgagagcacggtttcgc 18132813  T
Q  201 aaggctttcatcgcctccagcaacttctcacccgcctgtgtgcccacgacatcaaaatgtttctcaatacaaatcaaccaccaataagcgtc 292  Q
    |||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18132814 aaggctttcaccgcctccagcaacttctcaccctcctgtgttcccacgacatcaaaatgtttctcaatacaaatcaaccaccaataagcgtc 18132905  T

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Target: scaffold1195 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold1195
Description:

Target: scaffold1195; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 584 - 500
Alignment:
Q  39 gactcccattccaatccagattcctcttcttcatcagatataggtagaacg-tctctatactctggcttaaaatgccaaagtagtg 123  Q
    |||| |||||||||| |||||||||||||||||||||||||||||| |||| | || || ||| ||||||||||||||||||||||    
T  584 gactaccattccaattcagattcctcttcttcatcagatataggta-aacgctgtcaatcctcaggcttaaaatgccaaagtagtg 500  T

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Target: scaffold1195; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 1485 - 1436
Alignment:
Q  11 ttgaaggctgaatgtgtgaggcgtcgatgactcccattccaatccagatt 60  Q
    ||||||||||||||||||| || |||| ||||||||||||||| ||||||    
T  1485 ttgaaggctgaatgtgtgaagcatcgacgactcccattccaattcagatt 1436  T

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