View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4237_low_10 (Length: 285)
Name: NF4237_low_10
Description: NF4237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4237_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 34 - 276
Target Start/End: Complemental strand, 5028828 - 5028586
Alignment:
| Q |
34 |
ttcacacagtagacaatcgcaatcactgaaaaacaatctaacagttcaaattcacactgtgcagtatcacacagttctaatcccaacctttcatttctta |
133 |
Q |
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| T |
5028828 |
ttcacgcagtagacaatcacaatcactgaaaaacaatctaacagttcaaattcacacagtacagtatcacacatttctaatcccaacctttcatttctta |
5028729 |
T |
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| Q |
134 |
tctgacggcccgtagctgttactgcgctgacgcagttacatcatgggatccagttttacaatcggtttatggtacaccttgccccataccattagattaa |
233 |
Q |
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| T |
5028728 |
tcggacggctcgtagctgttactgcgctaacgcagttacatcatgggatccagtttcgcaatcagtttatggtacaccttgccccataccattagattaa |
5028629 |
T |
|
| Q |
234 |
gagcgaacacaatttctttttattagtctaacggcattcatct |
276 |
Q |
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| T |
5028628 |
gagcgaacacaatttctttttattagtctaacgacattcatct |
5028586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 31 - 188
Target Start/End: Complemental strand, 7595435 - 7595279
Alignment:
| Q |
31 |
aatttcacacagtagacaatcgcaatcactgaaaaacaatctaacagttcaaattcacactgtgcagtatcacacagttctaatcccaacctttcatttc |
130 |
Q |
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| T |
7595435 |
aatttcatgcagtagacaatcacaaccattgaaaaccaatttaatagttcaaattcacacagt-caatttcacacatttttaatttcaacctttcatttt |
7595337 |
T |
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| Q |
131 |
ttatctgacggcccgtagctgttactgcgctgacgcagttacatcatgggatccagtt |
188 |
Q |
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| T |
7595336 |
tgatcgaacggttagtagttgttactgcgttgacgcagttatagcgtgggatccagtt |
7595279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 154
Target Start/End: Complemental strand, 11930140 - 11930026
Alignment:
| Q |
40 |
cagtagacaatcgcaatcactgaaaaacaatctaacagttcaaattcacactgtgcagtatcacacagttctaatcccaacctttcatttcttatctgac |
139 |
Q |
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||||||| |||| || |||| ||||||||||||||||||||||||||||| ||||||| | ||||| || ||||| |||||||||||||| |||| ||| |
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| T |
11930140 |
cagtagaaaatctcagccactcaaaaacaatctaacagttcaaattcacacagtgcagtttgacacaattttaatctcaacctttcatttcatatcggac |
11930041 |
T |
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| Q |
140 |
ggcccgtagctgtta |
154 |
Q |
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| T |
11930040 |
ggcccgtagctgtta |
11930026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 59 - 185
Target Start/End: Original strand, 2869337 - 2869463
Alignment:
| Q |
59 |
ctgaaaaacaatctaacagttcaaattcacactgtgcagtatcacacagttctaatcccaacctttcatttcttatctgacggcccgtagctgttactgc |
158 |
Q |
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|||||||||||||||||||||||||| | || ||||| | |||||||||| ||||| ||||||||||||||| ||| ||||| | ||||| ||||||| |
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| T |
2869337 |
ctgaaaaacaatctaacagttcaaatactcatagtgcattttcacacagttttaatctcaacctttcatttctgatcggacggttcatagctattactgc |
2869436 |
T |
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| Q |
159 |
gctgacgcagttacatcatgggatcca |
185 |
Q |
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| T |
2869437 |
gttaacgtagttacaacgtgggatcca |
2869463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 100 - 188
Target Start/End: Original strand, 30861137 - 30861225
Alignment:
| Q |
100 |
tcacacagttctaatcccaacctttcatttcttatctgacggcccgtagctgttactgcgctgacgcagttacatcatgggatccagtt |
188 |
Q |
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|||||||||| | ||| ||||||||||||| | |||||||||||||||| |||||||||| | ||||| ||||||| |||||||||||| |
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| T |
30861137 |
tcacacagttttgatctcaacctttcatttttgatctgacggcccgtagttgttactgcgttaacgcaattacatcgtgggatccagtt |
30861225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 156
Target Start/End: Complemental strand, 17232675 - 17232556
Alignment:
| Q |
37 |
acacagtagacaatcgcaatcactgaaaaacaatctaacagttcaaattcacactgtgcagtatcacacagttctaatcccaacctttcatttcttatct |
136 |
Q |
| |
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||||| ||||||||| || || ||||||| |||||||||||| |||||||||| ||||||| |||||||||| ||||| ||| |||||||| | ||| |
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| T |
17232675 |
acacaatagacaatcacagccattgaaaaataatctaacagtttaaattcacacagtgcagtttcacacagttttaatcttaacttttcatttttgatcg |
17232576 |
T |
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| Q |
137 |
gacggcccgtagctgttact |
156 |
Q |
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| ||| |||||||||||||| |
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| T |
17232575 |
gtcggtccgtagctgttact |
17232556 |
T |
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