View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4237_low_12 (Length: 257)
Name: NF4237_low_12
Description: NF4237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4237_low_12 |
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| [»] scaffold0227 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 239
Target Start/End: Complemental strand, 29526751 - 29526524
Alignment:
| Q |
12 |
agagaccaaagcagatctgtgcaaatttcttggtatcgacagactcttttatgaacatggtatgggtagtgtgtccgaatcgagggagaaattgcctaga |
111 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||| |
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| T |
29526751 |
agagaccaaagcagatctgcgcaaatttcttggtatcgacagactcttttatgaacatggtatgagtagtgtgttcgaatcgagggcgaaattgcctaga |
29526652 |
T |
|
| Q |
112 |
aaaactatcggagagggatgggtttcactcgagttgggcggcctacctccaccaccgccaaagccgctagatccagatgtgtttgtggtgaagggtggat |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
29526651 |
aaaactatcggagagggatgggtttcactcgagttgggcggcctacctccaccgccgccaaagccgccagatccagacgtgtttgtggtgaagggtggat |
29526552 |
T |
|
| Q |
212 |
tatcctctggtttgatcgaactggcact |
239 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
29526551 |
tatcctctggtttgatcgaactggcact |
29526524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 12 - 239
Target Start/End: Complemental strand, 39702330 - 39702109
Alignment:
| Q |
12 |
agagaccaaagcagatctgtgcaaatttcttggtatcgacagactcttttatgaacatggtatgggtagtgtgtccgaatcgagggagaaattgcctaga |
111 |
Q |
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||||||||||| |||| |||||||||||||||||||| ||| ||| ||| |||||||||| || ||| ||||| ||||| ||||| | |||||||||| |
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| T |
39702330 |
agagaccaaagtagatttgtgcaaatttcttggtatcaacaaactatttgatgaacatggcgtgagtattgtgttcgaattgagggtgggattgcctaga |
39702231 |
T |
|
| Q |
112 |
aaaactatcggagagggatgggtttcactcgagttgggcggcctacctccaccaccgccaaagccgctagatccagatgtgtttgtggtgaagggtggat |
211 |
Q |
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| T |
39702230 |
acaactaccggagagggatgggtttcacttgagttggacggcct---tccagcaccgcc---gtcaccagatccaaacgcgtttgcggtgaagggtggat |
39702137 |
T |
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| Q |
212 |
tatcctctggtttgatcgaactggcact |
239 |
Q |
| |
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| |||||||||||||| ||||||||||| |
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| T |
39702136 |
tgtcctctggtttgattgaactggcact |
39702109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 239
Target Start/End: Original strand, 6081914 - 6082141
Alignment:
| Q |
12 |
agagaccaaagcagatctgtgcaaatttcttggtatcgacagactcttttatgaacatggtatgggtagtgtgtccgaatcgagggagaaattgcctaga |
111 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||| |
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| T |
6081914 |
agagaccaaagcagatctgcgcaaatttcttggtatcgacagactcttttatgaacatggtatgagtagtgtgttcgaatcgagggcgaaattgcctaga |
6082013 |
T |
|
| Q |
112 |
aaaactatcggagagggatgggtttcactcgagttgggcggcctacctccaccaccgccaaagccgctagatccagatgtgtttgtggtgaagggtggat |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| | ||||||||| |||||||||||||||||||||| |
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| T |
6082014 |
aaaactatcggagagggatgggtttcactcgagttgggcggcctacctccaccgccgccaaggcccccagatccagacgtgtttgtggtgaagggtggat |
6082113 |
T |
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| Q |
212 |
tatcctctggtttgatcgaactggcact |
239 |
Q |
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||||||||||||||||| |||||||||| |
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| T |
6082114 |
tatcctctggtttgatcaaactggcact |
6082141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 12 - 239
Target Start/End: Original strand, 10583413 - 10583639
Alignment:
| Q |
12 |
agagaccaaagcagatctgtgcaaatttcttggtatcgacagactcttttatgaacatggtatgggtagtgtgtccgaatcgagggagaaattgcctaga |
111 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||| |
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| T |
10583413 |
agagaccaaagcagatctgcgcaaatttcttggtatcgacagactcttttatgaacatggtatgagtagtgtgttcgaatcgagggcttc-ttgcctaga |
10583511 |
T |
|
| Q |
112 |
aaaactatcggagagggatgggtttcactcgagttgggcggcctacctccaccaccgccaaagccgctagatccagatgtgtttgtggtgaagggtggat |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| | ||||||||| |||||||||||||||||||||| |
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| T |
10583512 |
aaaactatcggagagggatgggtttcactcgagttgggcggcctacctccaccgccgccaaggcccccagatccagacgtgtttgtggtgaagggtggat |
10583611 |
T |
|
| Q |
212 |
tatcctctggtttgatcgaactggcact |
239 |
Q |
| |
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||||||||||||||||| |||||||||| |
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| T |
10583612 |
tatcctctggtttgatcaaactggcact |
10583639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 101 - 239
Target Start/End: Original strand, 49122859 - 49122997
Alignment:
| Q |
101 |
aattgcctagaaaaactatcggagagggatgggtttcactcgagttgggcggcctacctccaccaccgccaaagccgctagatccagatgtgtttgtggt |
200 |
Q |
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|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||| ||||||||||| |
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| T |
49122859 |
aattgcctagaaaaactatcgaagagggatgggtttcactcgagttgggcggcctacctccaccgccgccaaggccgccagatccagacgtgtttgtggt |
49122958 |
T |
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| Q |
201 |
gaagggtggattatcctctggtttgatcgaactggcact |
239 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||| |
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| T |
49122959 |
gaagggtggattatcctctggtttgatcaaactggcact |
49122997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 12 - 239
Target Start/End: Complemental strand, 18132489 - 18132262
Alignment:
| Q |
12 |
agagaccaaagcagatctgtgcaaatttcttggtatcgacagactcttttatgaacatggtatgggtagtgtgtccgaatcgagggagaaattgcctaga |
111 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||| || ||||||||||||| |
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| T |
18132489 |
agagaccaaagcagatcagcgcaaatttcttggtatcgacagacttttttatgaacatggtatgagtagtgtgttcgaatcgatggcgaaattgcctaga |
18132390 |
T |
|
| Q |
112 |
aaaactatcggagagggatgggtttcactcgagttgggcggcctacctccaccaccgccaaagccgctagatccagatgtgtttgtggtgaagggtggat |
211 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||| | ||||||||| |||||||||||||||||||||| |
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| T |
18132389 |
aaaactatcggagagggatgggtttcactcgagttgggcggcttacctccacggctgccaaagccaccagatccagacgtgtttgtggtgaagggtggat |
18132290 |
T |
|
| Q |
212 |
tatcctctggtttgatcgaactggcact |
239 |
Q |
| |
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||||| ||||||||||||||||||||| |
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| T |
18132289 |
gatcctttggtttgatcgaactggcact |
18132262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 12 - 152
Target Start/End: Original strand, 11789 - 11929
Alignment:
| Q |
12 |
agagaccaaagcagatctgtgcaaatttcttggtatcgacagactcttttatgaacatggtatgggtagtgtgtccgaatcgagggagaaattgcctaga |
111 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||| |
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| T |
11789 |
agagaccaaagcagatctgcgcaaatttcttggtatcgacagactcttttatgaacatggtatgagtagtgtgttcgaatcgagggcaaaattgcctaga |
11888 |
T |
|
| Q |
112 |
aaaactatcggagagggatgggtttcactcgagttgggcgg |
152 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
11889 |
aaaactatcggagagggatgggtttcactcgagttgggcgg |
11929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 239
Target Start/End: Original strand, 11928 - 11959
Alignment:
| Q |
208 |
ggattatcctctggtttgatcgaactggcact |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
11928 |
ggattatcctctggtttgatcgaactggcact |
11959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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