View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4237_low_17 (Length: 237)
Name: NF4237_low_17
Description: NF4237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4237_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 42 - 221
Target Start/End: Original strand, 11344136 - 11344315
Alignment:
| Q |
42 |
atctcgtcacgcatatacttttagaaattcatccatgcgtgtgtattgcacctctggataaagctttgatgcttcttctccatcctccagttcaaaattt |
141 |
Q |
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| T |
11344136 |
atctcgtcacgcatatgcttttagaaattcatccatgcgtgtgtattgcacctctggataaagctttgatgcttcttctccatcctccagttcaaaattt |
11344235 |
T |
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| Q |
142 |
gtcaaacacccttcaaagaaaatatgatagaaatgccccactgctacttgtcctgcaaggtccaaacctgaattccacac |
221 |
Q |
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| T |
11344236 |
gtcaaacacccttcaaagaaaatatgatagaaatgccccactgctacttggcctgcaaggtccaaacctgaattccacac |
11344315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 52 - 221
Target Start/End: Original strand, 11307990 - 11308159
Alignment:
| Q |
52 |
gcatatacttttagaaattcatccatgcgtgtgtattgcacctctggataaagctttgatgcttcttctccatcctccagttcaaaatttgtcaaacacc |
151 |
Q |
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| T |
11307990 |
gcatataattttagaaattcatccatgcgtgtgtattgcacctctggataaagctttgacgcctcttctccatcacctatttcaaaatttgccaaacacc |
11308089 |
T |
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| Q |
152 |
cttcaaagaaaatatgatagaaatgccccactgctacttgtcctgcaaggtccaaacctgaattccacac |
221 |
Q |
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| T |
11308090 |
cttcatagaaaatatgatagaaatgccccactcctacttggcttgcaaggtccaaacctaaatttcacac |
11308159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 191
Target Start/End: Original strand, 30180967 - 30181091
Alignment:
| Q |
70 |
tcatccatgcgtgtgtattgcacctctggataaagctttgatgcttcttctccatcctcc---agttcaaaatttgtcaaacacccttcaaagaaaatat |
166 |
Q |
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| T |
30180967 |
tcatccatgcgtgtgtaattcacttcagggtaaagcttggatgcttcttctccatcttcccctatttcaaagtttgtcaaacaaccctcgtagaaaatat |
30181066 |
T |
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| Q |
167 |
gatagaaatgccccactgctacttg |
191 |
Q |
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| T |
30181067 |
gatagaagtgtccaattgctacttg |
30181091 |
T |
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