View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4237_low_18 (Length: 233)
Name: NF4237_low_18
Description: NF4237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4237_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 34552686 - 34552485
Alignment:
| Q |
15 |
gatgaagatggtgatgaaggtggccatattaataaagaggaagtaaatattatctcgtttgaaaaattagattccttaacactttcaagactcccaagta |
114 |
Q |
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| T |
34552686 |
gatgaagatggtgatgaaggtgaccatattaataaagaggaagtaaatattatctcgtttgaaaaattagattccttaacactttcaagactcccaagta |
34552587 |
T |
|
| Q |
115 |
tagcacatgtttctgcaaattcttacaagatagaatttccatccttaagaaagttggtaattaatgattgtccaaagctagatacattgcttttgcaatg |
214 |
Q |
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| T |
34552586 |
tagcacatgtttctgcaaattcttacaagatagaatttccatccttaagaaagttggtaattgatgattgtccaaagctagatacattgcttttgctatg |
34552487 |
T |
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| Q |
215 |
tg |
216 |
Q |
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|| |
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| T |
34552486 |
tg |
34552485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 34564411 - 34564218
Alignment:
| Q |
17 |
tgaagatggtgatgaaggtggccatattaataaagaggaagtaaatattatctcgtttgaaaaattagattccttaacactttcaagactcccaagtata |
116 |
Q |
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|||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34564411 |
tgaagaagatgatgaaggtggccatattaataaagaggaagtaaatatcatctcgtttgaaaaattagattccttaacactttcaggactcccaagtata |
34564312 |
T |
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| Q |
117 |
gcacatgtttctgcaaattcttacaagatagaatttccatccttaagaaagttggtaattaatgattgtccaaagctagatacattgcttttgc |
210 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
34564311 |
gcacgtgtttctgcaaattcttacgagatagaatttccatccttaagaaagttggtaattgatgattgtccaaagctagatacattgtttttgc |
34564218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 132191 - 132383
Alignment:
| Q |
18 |
gaagatggtgatgaaggtggccatattaataaagaggaagtaaatattatctcgtttgaaaaattagattccttaacactttcaagactcccaagtatag |
117 |
Q |
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|||||||| || |||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||| | ||| |
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| T |
132191 |
gaagatggcgaagaaggtggtcaaattaataaagaggaagtaaatattatctcgtttgaaaaactagattccttaaaactttctggactcccaaatctag |
132290 |
T |
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| Q |
118 |
cacatgtttctgcaaattcttacaagatagaatttccatccttaagaaagttggtaattaatgattgtccaaagctagatacattgcttttgc |
210 |
Q |
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||| ||||||||||||||||| | ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||| |
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| T |
132291 |
cacgtgtttctgcaaattcttgcgagatagaatttccatccttaagaaagttggtgattgatgattgtccaaagctagatacattgtttttgc |
132383 |
T |
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