View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4237_low_2 (Length: 556)

Name: NF4237_low_2
Description: NF4237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4237_low_2
NF4237_low_2
[»] chr8 (4 HSPs)
chr8 (86-486)||(26757895-26758315)
chr8 (510-544)||(26757837-26757871)
chr8 (88-120)||(1875698-1875730)
chr8 (88-120)||(2552812-2552844)
[»] chr2 (2 HSPs)
chr2 (411-479)||(15790483-15790551)
chr2 (510-538)||(15790576-15790604)
[»] scaffold0531 (1 HSPs)
scaffold0531 (88-124)||(7012-7048)
[»] scaffold0047 (1 HSPs)
scaffold0047 (88-118)||(63536-63566)
[»] scaffold0013 (1 HSPs)
scaffold0013 (88-118)||(58398-58428)
[»] chr7 (7 HSPs)
chr7 (89-119)||(48843316-48843346)
chr7 (88-125)||(40116238-40116275)
chr7 (88-124)||(3149009-3149045)
chr7 (88-120)||(27234868-27234900)
chr7 (88-120)||(27234956-27234988)
chr7 (88-120)||(31669805-31669837)
chr7 (88-120)||(40116150-40116182)
[»] chr4 (3 HSPs)
chr4 (88-118)||(50519360-50519390)
chr4 (88-124)||(16200173-16200209)
chr4 (88-124)||(39017588-39017624)
[»] chr1 (4 HSPs)
chr1 (88-118)||(47991789-47991819)
chr1 (90-119)||(31634492-31634521)
chr1 (88-120)||(3160760-3160792)
chr1 (88-120)||(3160848-3160880)
[»] scaffold0223 (1 HSPs)
scaffold0223 (88-117)||(26675-26704)
[»] chr6 (2 HSPs)
chr6 (89-118)||(26498692-26498721)
chr6 (88-124)||(15467579-15467615)
[»] chr5 (2 HSPs)
chr5 (88-120)||(25596425-25596457)
chr5 (88-120)||(27990455-27990487)


Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 86 - 486
Target Start/End: Complemental strand, 26758315 - 26757895
Alignment:
Q  86 attgaacctaaaaagtcaaatttgcttataattagtaactaaattgaaagacaataaaaacagttattgatctcttttctggttttttcctgaagtgaca 185  Q
    |||||| ||||||||| ||||||||||||||| ||||||| ||||||||||| || |||||| ||||||||||||||| |||||||||||||||||||||    
T  26758315 attgaatctaaaaagttaaatttgcttataatcagtaactgaattgaaagacgatgaaaacatttattgatctcttttatggttttttcctgaagtgaca 26758216  T
Q  186 taaattgaagaacagatcatataaccgcaacaatgtttaaatccgtacgcaggaaacgaagttgattgttaacaaaatctggctcgagagattgtgttaa 285  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||| || |||||||||||||||| ||||||||| ||||||||||||||||||||    
T  26758215 taaattgaagaacagatcatacaactgcaacaatgtttaaatccgtacgtagaaaacgaagttgattgtaaacaaaatcaggctcgagagattgtgttaa 26758116  T
Q  286 agagttctatagac-aatgtgtttatttatattaacatgcaaattcaattacctatctccagcagagtgaatagaacacac------------------- 365  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                       
T  26758115 agagtcctatagacaaatgtgtttatttatattaacatgcaaattcaattacctatctccagcagagtgaatagaacacacaattgtagttgaaaatttt 26758016  T
Q  366 aaaagaaattaaggatattttcatctaaaataggtttaactgaacatcatgttcttatgtttatttttaatcaatctggaccctcactgaagtcatcatg 465  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26758015 aaaagaaattaaggatattttcatctaaaataggtttaactgaacatcatgttcttatgtttatttttaatcaatctggaccctcactgaagtcatcatg 26757916  T
Q  466 aaattcgtatactacgtaatc 486  Q
    |||||| ||||||||||||||    
T  26757915 aaattcttatactacgtaatc 26757895  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 510 - 544
Target Start/End: Complemental strand, 26757871 - 26757837
Alignment:
Q  510 ttgcactaaatccaaataacaattttcatagccta 544  Q
    |||||||||||||||||||||||||||||||||||    
T  26757871 ttgcactaaatccaaataacaattttcatagccta 26757837  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 1875730 - 1875698
Alignment:
Q  88 tgaacctaaaaagtcaaatttgcttataattag 120  Q
    |||||||||||||||||||||||||||| ||||    
T  1875730 tgaacctaaaaagtcaaatttgcttatatttag 1875698  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 2552844 - 2552812
Alignment:
Q  88 tgaacctaaaaagtcaaatttgcttataattag 120  Q
    |||||||||||||| ||||||||||||||||||    
T  2552844 tgaacctaaaaagtaaaatttgcttataattag 2552812  T

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Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 411 - 479
Target Start/End: Original strand, 15790483 - 15790551
Alignment:
Q  411 atcatgttcttatgtttatttttaatcaatctggaccctcactgaagtcatcatgaaattcgtatacta 479  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||  |||||||    
T  15790483 atcatgttcttatgtttatttttcatcaatctggaccctcaccgaagtcatcatgaaattattatacta 15790551  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 538
Target Start/End: Original strand, 15790576 - 15790604
Alignment:
Q  510 ttgcactaaatccaaataacaattttcat 538  Q
    |||||||||||||||||||||||||||||    
T  15790576 ttgcactaaatccaaataacaattttcat 15790604  T

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Target: scaffold0531 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 7048 - 7012
Alignment:
Q  88 tgaacctaaaaagtcaaatttgcttataattagtaac 124  Q
    |||| ||||||||||||||||||||||||||||||||    
T  7048 tgaatctaaaaagtcaaatttgcttataattagtaac 7012  T

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Target: scaffold0047 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 118
Target Start/End: Original strand, 63536 - 63566
Alignment:
Q  88 tgaacctaaaaagtcaaatttgcttataatt 118  Q
    |||||||||||||||||||||||||||||||    
T  63536 tgaacctaaaaagtcaaatttgcttataatt 63566  T

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Target: scaffold0013 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 118
Target Start/End: Original strand, 58398 - 58428
Alignment:
Q  88 tgaacctaaaaagtcaaatttgcttataatt 118  Q
    |||||||||||||||||||||||||||||||    
T  58398 tgaacctaaaaagtcaaatttgcttataatt 58428  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 89 - 119
Target Start/End: Original strand, 48843316 - 48843346
Alignment:
Q  89 gaacctaaaaagtcaaatttgcttataatta 119  Q
    |||||||||||||||||||||||||||||||    
T  48843316 gaacctaaaaagtcaaatttgcttataatta 48843346  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 125
Target Start/End: Original strand, 40116238 - 40116275
Alignment:
Q  88 tgaacctaaaaagtcaaatttgcttataattagtaact 125  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  40116238 tgaacctaaaaagtcaaatttgcttgtaattaggaact 40116275  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 3149045 - 3149009
Alignment:
Q  88 tgaacctaaaaagtcaaatttgcttataattagtaac 124  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  3149045 tgaacttaaaaagtcaaattttcttataattagtaac 3149009  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 27234900 - 27234868
Alignment:
Q  88 tgaacctaaaaagtcaaatttgcttataattag 120  Q
    |||||||||||||| ||||||||||||||||||    
T  27234900 tgaacctaaaaagtaaaatttgcttataattag 27234868  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 120
Target Start/End: Original strand, 27234956 - 27234988
Alignment:
Q  88 tgaacctaaaaagtcaaatttgcttataattag 120  Q
    ||||||||||||||||||||| |||||||||||    
T  27234956 tgaacctaaaaagtcaaatttacttataattag 27234988  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 31669837 - 31669805
Alignment:
Q  88 tgaacctaaaaagtcaaatttgcttataattag 120  Q
    |||||||||||||||||||||||||||| ||||    
T  31669837 tgaacctaaaaagtcaaatttgcttatatttag 31669805  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 40116182 - 40116150
Alignment:
Q  88 tgaacctaaaaagtcaaatttgcttataattag 120  Q
    ||||||||||||||| |||||||||||||||||    
T  40116182 tgaacctaaaaagtcgaatttgcttataattag 40116150  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 118
Target Start/End: Original strand, 50519360 - 50519390
Alignment:
Q  88 tgaacctaaaaagtcaaatttgcttataatt 118  Q
    |||||||||||||||||||||||||||||||    
T  50519360 tgaacctaaaaagtcaaatttgcttataatt 50519390  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 16200209 - 16200173
Alignment:
Q  88 tgaacctaaaaagtcaaatttgcttataattagtaac 124  Q
    |||||||||||||| |||||||||||||||| |||||    
T  16200209 tgaacctaaaaagttaaatttgcttataattggtaac 16200173  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 39017588 - 39017624
Alignment:
Q  88 tgaacctaaaaagtcaaatttgcttataattagtaac 124  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  39017588 tgaacataaaaagtcaaattttcttataattagtaac 39017624  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 118
Target Start/End: Complemental strand, 47991819 - 47991789
Alignment:
Q  88 tgaacctaaaaagtcaaatttgcttataatt 118  Q
    |||||||||||||||||||||||||||||||    
T  47991819 tgaacctaaaaagtcaaatttgcttataatt 47991789  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 119
Target Start/End: Original strand, 31634492 - 31634521
Alignment:
Q  90 aacctaaaaagtcaaatttgcttataatta 119  Q
    ||||||||||||||||||||||||||||||    
T  31634492 aacctaaaaagtcaaatttgcttataatta 31634521  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 3160792 - 3160760
Alignment:
Q  88 tgaacctaaaaagtcaaatttgcttataattag 120  Q
    |||||||||||||||||||||||||||| ||||    
T  3160792 tgaacctaaaaagtcaaatttgcttatatttag 3160760  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 120
Target Start/End: Original strand, 3160848 - 3160880
Alignment:
Q  88 tgaacctaaaaagtcaaatttgcttataattag 120  Q
    |||||||||||||||||||||||||||| ||||    
T  3160848 tgaacctaaaaagtcaaatttgcttatatttag 3160880  T

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Target: scaffold0223 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 117
Target Start/End: Original strand, 26675 - 26704
Alignment:
Q  88 tgaacctaaaaagtcaaatttgcttataat 117  Q
    ||||||||||||||||||||||||||||||    
T  26675 tgaacctaaaaagtcaaatttgcttataat 26704  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 118
Target Start/End: Original strand, 26498692 - 26498721
Alignment:
Q  89 gaacctaaaaagtcaaatttgcttataatt 118  Q
    ||||||||||||||||||||||||||||||    
T  26498692 gaacctaaaaagtcaaatttgcttataatt 26498721  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 15467615 - 15467579
Alignment:
Q  88 tgaacctaaaaagtcaaatttgcttataattagtaac 124  Q
    |||| |||||||||||||||| |||||||||||||||    
T  15467615 tgaatctaaaaagtcaaatttacttataattagtaac 15467579  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 25596457 - 25596425
Alignment:
Q  88 tgaacctaaaaagtcaaatttgcttataattag 120  Q
    |||||||||||||| ||||||||||||||||||    
T  25596457 tgaacctaaaaagttaaatttgcttataattag 25596425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 120
Target Start/End: Original strand, 27990455 - 27990487
Alignment:
Q  88 tgaacctaaaaagtcaaatttgcttataattag 120  Q
    |||||||||||||| ||||||||||||||||||    
T  27990455 tgaacctaaaaagtgaaatttgcttataattag 27990487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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