View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4237_low_21 (Length: 227)
Name: NF4237_low_21
Description: NF4237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4237_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 211
Target Start/End: Complemental strand, 49256931 - 49256733
Alignment:
| Q |
13 |
agagacagaaagacttggaagtgaaggcaaacctgtttttcccagtttgtaaaacttgttataagggatagcaaaactgcttgacaggaggcaccaacaa |
112 |
Q |
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| T |
49256931 |
agagccagaaagacttggaagtgaaggcaaacctgtttttcccagtttgtaaaacttgttataagggatagcaaaactgcttgacaggaggcaccaacaa |
49256832 |
T |
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| Q |
113 |
ttatcccaatccaaagaccttttcctctcaattcaaaccagaaacccaatataacagcaattggaattccaaaaacataataggcaccaaggttcacat |
211 |
Q |
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| T |
49256831 |
ttatcccaatccaaagaccttttcctctcaattcaaaccagaaacccaatataacagcaattggaattccaaaaacataataggctccaaggttcacat |
49256733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 21 - 211
Target Start/End: Complemental strand, 49269883 - 49269693
Alignment:
| Q |
21 |
aaagacttggaagtgaaggcaaacctgtttttcccagtttgtaaaacttgttataagggatagcaaaactgcttgacaggaggcaccaacaattatccca |
120 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| |||||||||||| ||||||| |
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| T |
49269883 |
aaagacttgggagcgaaggcaaacctgtttttcccagtttgtaaaacctgttataagggctagcaaaagtgcttgacagaaggcaccaacaagtatccca |
49269784 |
T |
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| Q |
121 |
atccaaagaccttttcctctcaattcaaaccagaaacccaatataacagcaattggaattccaaaaacataataggcaccaaggttcacat |
211 |
Q |
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||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
49269783 |
atccacagtccttttcctctcaactcaaaccagaaacccaatataacagcaattggaattccaaaaacatagtaggctccaaggttcacat |
49269693 |
T |
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