View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4237_low_22 (Length: 217)
Name: NF4237_low_22
Description: NF4237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4237_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 4e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 25979202 - 25979001
Alignment:
| Q |
1 |
gtgaagcggctgatgaagagctggaaaaattgaagaaaggaactaaggaaagcacagcaaaatcaagctcttcaagtnnnnnnnnn----ggaaatggtt |
96 |
Q |
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| T |
25979202 |
gtgaagcggctgatgaagagctggaaaaattgaagaaaggaactaaggaaagcacagcaaaatcaagctcttcaagtaaaaaaaaaaaaaggaaatggtt |
25979103 |
T |
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| Q |
97 |
gtgatgaagatcatacatctacttgaaatccagttgaatagacggatgaggctgaagatgatgtaaaatggcaaactaacacataaaaattcaagaacgg |
196 |
Q |
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| T |
25979102 |
gcgatgaagatcatacatctacttgaaatccagttgaatagacggatgaggctgaagatgatgtacaatggcaaaccaacacataaaaattcaagaacgg |
25979003 |
T |
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| Q |
197 |
tt |
198 |
Q |
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|| |
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| T |
25979002 |
tt |
25979001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 25973824 - 25973660
Alignment:
| Q |
1 |
gtgaagcggctgatgaagagctggaaaaattgaagaaaggaactaaggaaagcacagcaaaatcaagctcttcaagtnnnnnnnnnggaaatggttgtga |
100 |
Q |
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||||||| ||||| ||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||| || ||| |
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| T |
25973824 |
gtgaagcagctgacgaagagctgaaaaaattgaag----gaactaaggaaagcaccacaaaatcaagctcttcaag---gaaaaatggaaatgattctga |
25973732 |
T |
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| Q |
101 |
tgaagatcatacatctacttgaaatccagttgaatagacggatgaggctgaagatgatgtaaaatggcaaac |
172 |
Q |
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| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
25973731 |
taaagatcatacatctacttgaagtccagttgatgagacggatgaggctgaagatgatgtacaatggcaaac |
25973660 |
T |
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