View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4237_low_3 (Length: 491)
Name: NF4237_low_3
Description: NF4237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4237_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 79 - 400
Target Start/End: Complemental strand, 30216591 - 30216271
Alignment:
| Q |
79 |
ggtaaaaagtgatttgtggcattgattaacattaactattaaaatcataataattaatgatttagctttattagtagtctgaaaagtgaaattagtgtca |
178 |
Q |
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| T |
30216591 |
ggtaaaaagtgatttgtggcattgattaacattaattataaaaatcataataattaatgatttagctttattagtagtctgaaaagtgaaattagtgtca |
30216492 |
T |
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| Q |
179 |
ttaattattcgaaaacgacttaacaagctatcctcaactgttttgtctctctcataactcattcattcaacaactcaaatccagctctactagtacgttt |
278 |
Q |
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| T |
30216491 |
ttaattattcgaaaacgacttaacaagctatcctcaactgttttgtctctctcataactcattcattcaacaactcaaatccagctctactagtacgttt |
30216392 |
T |
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| Q |
279 |
tctacattacaattaactcacgttcatttgtctccatttttcttttcaaatcattaccgtttcatcatttcaataacaataataatatcaacaaaaatta |
378 |
Q |
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| T |
30216391 |
tctacattacaattaactcacgttcatttgtctccatttttcttttcaaatcattaccgtttcatcatttcaataacaataataatatcaac-aaaatta |
30216293 |
T |
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| Q |
379 |
cacttacaaaacactgaacatt |
400 |
Q |
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| T |
30216292 |
cacttataaaacactcaacatt |
30216271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 386 - 476
Target Start/End: Complemental strand, 30216259 - 30216169
Alignment:
| Q |
386 |
aaaacactgaacattacactaacacgtcaacatgtatatgacacgttagactatcagacacatcttcaatgtaaagtgtcagtgtttctag |
476 |
Q |
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|||| ||||||||| | | |||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| |||||||||| |||| |
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| T |
30216259 |
aaaaaactgaacatgaaattaacacgtcaacatttatctgacacgttagactatcagacacatcttcaatttaaaatgtcagtgttcctag |
30216169 |
T |
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