View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4237_low_5 (Length: 326)
Name: NF4237_low_5
Description: NF4237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4237_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 102 - 322
Target Start/End: Complemental strand, 34646751 - 34646531
Alignment:
| Q |
102 |
aataaatgatttgaaacattagtgttttcgttttaatactacatagtattgcattacttgttaatcaagttaccatgttattttgcttgaaacagggatt |
201 |
Q |
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| T |
34646751 |
aataaatgatttgaaacattagtgttttcgttttaatactacatagtattgcattacttgttaatcaagttaccatgttattttgcttgaaacagggatt |
34646652 |
T |
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| Q |
202 |
gattagtattacggtatcaactatactaccacatttccgtcctccaccatgtccaacacaagtaaattgcaaagaagcgacatcttcacaattattacca |
301 |
Q |
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| T |
34646651 |
gattagtattacggtatcaactatactaccacatttccgtcctccaccatgtccaacacaagtaaattgcaaagaagccacatcttcacaattattacca |
34646552 |
T |
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| Q |
302 |
ctctacatgtctctgctcctc |
322 |
Q |
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|||||||||||||| |||||| |
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| T |
34646551 |
ctctacatgtctctcctcctc |
34646531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 34646885 - 34646783
Alignment:
| Q |
1 |
tactttatttgtccaatcttttaaatccaaataaatggttttagatcagtggttagggtttgactttataacttaaaaggacagagttcgaatcccactg |
100 |
Q |
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| T |
34646885 |
tactttatttgtccaatcttttaaatccaaataaatggtttcagatcagtggttagggtttgactttataacttaaaaggacagagttcgaatcccactg |
34646786 |
T |
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| Q |
101 |
gaa |
103 |
Q |
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||| |
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| T |
34646785 |
gaa |
34646783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 34661090 - 34661036
Alignment:
| Q |
216 |
tatcaactatactaccacatttccgtcctccaccatgtccaacacaagtaaattg |
270 |
Q |
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||||||||||||| ||||| | |||||||||||||||||||| ||||| ||||| |
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| T |
34661090 |
tatcaactatactcccacacatgcgtcctccaccatgtccaactcaagtgaattg |
34661036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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