View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4238_high_5 (Length: 431)
Name: NF4238_high_5
Description: NF4238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4238_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 7 - 415
Target Start/End: Complemental strand, 5446384 - 5445979
Alignment:
| Q |
7 |
acagacatgacaccgcctttagtttcaacaccaagactaaaaggcataacatccaacagtaacaagtcttcgattttcttgtctccttcagtattcaata |
106 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5446384 |
acagacatgacaccacctttagtttcaacaccaagactaaaaggcataacatccaacagtaacaagtcttcgattttcttgtctccttcagtattcaata |
5446285 |
T |
|
| Q |
107 |
ttattgctgcttgaacagcggcgccataagccacagcttcatcaggattaatgcttttgcaaggctctttgacttcatcgttgactctaaacatattctt |
206 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5446284 |
tt---gctgcttgaacagcggcgccataagccacagcttcatcaggattaatgcttttgcaaggctctttgacttcatcgttgactctaaacatattctt |
5446188 |
T |
|
| Q |
207 |
caatagttgttgaatcttcggaattctagtagaccctcctacaagaacaaactcatgaacttggcttttactaatttttacctcaaccaaacacttctcc |
306 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5446187 |
caatagttgttgaatcttcggaattgtagtagaccctcctacaagaacaaactcatgaacttggcttttactaatttttacctcaaccaaacacttctcc |
5446088 |
T |
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| Q |
307 |
acagtctccatgcactttttgaacaaatccttgtttatttcctcaaagaaagctctagtaacagtgaaatgtagatcaatccctccacatagagaatcaa |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5446087 |
acagtctccatgcactttttgaacaaatccttgtttatttcctcaaagaaagctctagtaacagtgaaatgtagatcaatccctccacatagagaatcaa |
5445988 |
T |
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| Q |
407 |
gctcaataa |
415 |
Q |
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||||||||| |
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| T |
5445987 |
gctcaataa |
5445979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 5433001 - 5433183
Alignment:
| Q |
11 |
acatgacaccgcctttagtttcaacaccaagactaaaaggcataacatccaacagtaacaagtcttcgattttcttgtctccttcagtattcaatattat |
110 |
Q |
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| T |
5433001 |
acatgacaccaccatcagtttcaacaccaagactgtgaggtataacatctaacaacaacaagtcttgaattttcttgtctccttcaacactcaa---tat |
5433097 |
T |
|
| Q |
111 |
tgctgcttgaacagcggcgccataagccacagcttcatcaggattaatgcttttgcaaggctctttgacttcatcgttgactctaa |
196 |
Q |
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| T |
5433098 |
cgctgcttgaaccgaggcatcatacaccacaacttcataaggattaatgcttttgcatggctctttgatttctccattgactctaa |
5433183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 369
Target Start/End: Original strand, 5433197 - 5433294
Alignment:
| Q |
272 |
ttttactaatttttacctcaaccaaacacttctccacagtctccatgcactttttgaacaaatccttgtttatttcctcaaagaaagctctagtaaca |
369 |
Q |
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| T |
5433197 |
ttttacttatttttgcctcatcctaaaatttttccagtgtctccatgcattgtttaaacaagtcctggtttattccctcaaacaaagctctagtaaca |
5433294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 167
Target Start/End: Original strand, 7541887 - 7541936
Alignment:
| Q |
118 |
tgaacagcggcgccataagccacagcttcatcaggattaatgcttttgca |
167 |
Q |
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| T |
7541887 |
tgaacagctgccccataagcaacagcctcatcaggattaatgctcttgca |
7541936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 167
Target Start/End: Original strand, 14703069 - 14703118
Alignment:
| Q |
118 |
tgaacagcggcgccataagccacagcttcatcaggattaatgcttttgca |
167 |
Q |
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| T |
14703069 |
tgaacagctgccccataagctacagcttcatcagggttaatgctgttgca |
14703118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 17704485 - 17704436
Alignment:
| Q |
207 |
caatagttgttgaatcttcggaattctagtagaccctcctacaagaacaa |
256 |
Q |
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|||||||||||||| ||| |||||||| ||||| ||||||||||| |||| |
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| T |
17704485 |
caatagttgttgaacctttggaattctggtagaacctcctacaaggacaa |
17704436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 17717117 - 17717068
Alignment:
| Q |
207 |
caatagttgttgaatcttcggaattctagtagaccctcctacaagaacaa |
256 |
Q |
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|||||||||||||| ||| |||||||| ||||| ||||||||||| |||| |
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| T |
17717117 |
caatagttgttgaacctttggaattctggtagaacctcctacaaggacaa |
17717068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 11999066 - 11999118
Alignment:
| Q |
115 |
gcttgaacagcggcgccataagccacagcttcatcaggattaatgcttttgca |
167 |
Q |
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||||||||||| || |||||||| ||||| |||||||| |||||||| ||||| |
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| T |
11999066 |
gcttgaacagctgccccataagctacagcctcatcagggttaatgctcttgca |
11999118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 54396078 - 54396142
Alignment:
| Q |
112 |
gctgcttgaacagcggcgccataagccacagcttcatcaggattaatgcttttgcaaggctcttt |
176 |
Q |
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|||||||||||||| || |||||||| |||||||||||||| ||||| || |||||| ||||||| |
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| T |
54396078 |
gctgcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctcttt |
54396142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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