View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4238_low_1 (Length: 874)

Name: NF4238_low_1
Description: NF4238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4238_low_1
NF4238_low_1
[»] chr3 (2 HSPs)
chr3 (19-857)||(45441622-45442460)
chr3 (112-160)||(32836638-32836686)


Alignment Details
Target: chr3 (Bit Score: 798; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 798; E-Value: 0
Query Start/End: Original strand, 19 - 857
Target Start/End: Original strand, 45441622 - 45442460
Alignment:
Q  19 agaacgtaccaagacaaccgattcaacttcaattggtaaaatataaagaagcatcattaccatttaatgtaatctggatcacagtcatttttcatatcac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  45441622 agaacgtaccaagacaaccgattcaacttcaattggtaaaatataaagaagcatcattaccatttaatgtaatctggatcacagttattttttatatcac 45441721  T
Q  119 cctacaaatgcaagcactgccaacttcaggtcgaaaaaggactttgccatgttgatatatcagtgataagttctcgcagttgatctatgagtatcttcag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45441722 cctacaaatgcaagcactgccaacttcaggtcgaaaaaggactttgccatgttgatatatcagtgataagttctcgcagttgatctatgagtatcttcag 45441821  T
Q  219 gtgcaagttcttgttgccaagttcctacatttaaggattgaaattccaatgcttaacaacaatataattaatnnnnnnngagacaggctcttaataactt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  45441822 gtgcaagttcttgttgccaagttcctacatttaaggattgaaattccaatgcttaacaacaatataattaataaaaaaagagacaggctcttaataactt 45441921  T
Q  319 cagtcaagaatccacaagctttacccaattgaaattgtttcagggtttcagaaataaactaaaaatataaaacgcatcataagaatgtcattagattctg 418  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45441922 cagtcaagaatccacaagcttttcccaattgaaattgtttcagggtttcagaaataaactaaaaatataaaacgcatcataagaatgtcattagattctg 45442021  T
Q  419 ttaactgcagctgacatagtttgatgaaaaaggtattttccgatgaactaaaacagtaaaacccgagactaaagtaataaattcgatgtttggggtttgg 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45442022 ttaactgcagctgacatagtttgatgaaaaaggtattttccgatgaactaaaacagtaaaacccgagactaaaataataaattcgatgtttggggtttgg 45442121  T
Q  519 aaagagtgggatcaaggatagagacagaggttaatacaacaaacctttctcaaagaagaggcttgctcttccaatttctcaatttcagcttcgtccatag 618  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45442122 aaagagtgtgatcaaggatagagacagaggttaatacaacaaacctttctcaaagaagaggcttgctcttccaatttctcaatttcagcttcgtccatag 45442221  T
Q  619 ggctgtcagctgaaccaccgtcaaatgtgtttgcctataatactaaccaagttagtttaacaggaaaacaaaagctttgctagctaatatgatggtcata 718  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45442222 ggctgtcagctgaaccaccgtcaaatgtgtttgcctataatactaaccaagttagtttaacaggaaaacaaaagctttgctagctaatatgatggtcata 45442321  T
Q  719 cagctcgcaataagatgcacgtttgtgagtcaataaccccgatcatttaacagaatatggagtcttaagtctatgtaaggaagacactgatttctgaata 818  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45442322 cagctcgcaataagatgcacgtttgtgagtcaataaccccgatcatttaacagaatatggagtcttaagtctatgtaaggaagacactgatttctgaata 45442421  T
Q  819 gaattttcttttaatgcagcatctttttcctagcagtat 857  Q
    |||||||||||||||||||||||||||||||||||||||    
T  45442422 gaattttcttttaatgcagcatctttttcctagcagtat 45442460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 32836638 - 32836686
Alignment:
Q  112 atatcaccctacaaatgcaagcactgccaacttcaggtcgaaaaaggac 160  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  32836638 atatcaccctacaaatgcaagcactaccaacttctggtcgaaaaaggac 32836686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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