View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4238_low_10 (Length: 247)
Name: NF4238_low_10
Description: NF4238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4238_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 32099297 - 32099066
Alignment:
| Q |
1 |
aaagacagaaattttcccttcttttcccccctctttcccttgnnnnnnngtgtcaaaatcatcctctttcccaacaccaccaccacctccaccgcctcta |
100 |
Q |
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| T |
32099297 |
aaagacagaaagtttccattcattttcaccctctttgccttgcttatttgtgtcacaatcatcctctttgccaacaccaccatcaacttcaccgcctcta |
32099198 |
T |
|
| Q |
101 |
atccaattgccttctaccccgacaacgtaaaagtgcagcaaccattcaatcaccatgatcctccagtactcacatattcaaaagatcatcaagaacaacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
32099197 |
atccaattgccttctaccccgacaacgtaaaagtgcagcaaccattcaatcaccatgatcctccagcactcacagattcaaaagatcatcaagaacaacc |
32099098 |
T |
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| Q |
201 |
actagaccacgatgcgcctccagtactcacag |
232 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
32099097 |
actagaccacgatgcgcctccagtactcacag |
32099066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 32099081 - 32099009
Alignment:
| Q |
160 |
cctccagtactcacatattcaaaagatcatcaagaacaaccactagaccacgatgcgcctccagtactcacag |
232 |
Q |
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||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||| |||| |
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| T |
32099081 |
cctccagtactcacagattcaaaagatcatcaagaagaaccactacaccacgatgcgcctccagtacttacag |
32099009 |
T |
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