View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4238_low_12 (Length: 243)
Name: NF4238_low_12
Description: NF4238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4238_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 35793926 - 35793705
Alignment:
| Q |
1 |
aagtgcagaactaatttgtgggtacaattgtacctactcgtatattaagagannnnnnnaatgtaaaagattgatttatagaactaaaattgattcatan |
100 |
Q |
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| T |
35793926 |
aagtgcagaactaatttgtgggtacaattgtaactaatcgtatattaagagatttttttaatgtaaaagattgatttatagaactaaaattgattcatat |
35793827 |
T |
|
| Q |
101 |
nnnnnnnnggtcaggaaaattgattcattttattataagtgttagttaattttataactaactaggatataataaaccgtgcttgttgatgaagctggga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35793826 |
ttttttttggtcaggaaaattgattcattttattataagtgttagttaattttataactaactaggatataataaaccgtgcttgttgatgaagctggga |
35793727 |
T |
|
| Q |
201 |
cagcttagtacaatgcgtgcaa |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
35793726 |
cagcttagtacaatgcgtgcaa |
35793705 |
T |
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