View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4238_low_13 (Length: 241)
Name: NF4238_low_13
Description: NF4238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4238_low_13 |
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| [»] scaffold0137 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 3899190 - 3898974
Alignment:
| Q |
10 |
gcagagagactaaggagagaagagtatgtgttccatgcaaaactagcacaacaagcggaacgctacgaggagatggtttccttcatgcagaagatagttg |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3899190 |
gcagagagactaaggagagaagagtatgtgttccatgcaaaactagcacaacaagcggaacgctacgaggagatggtttccttcatgcagaagatagttg |
3899091 |
T |
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| Q |
110 |
tagggtacacaccagcctcagagcttagcttggaagagatgaacctactatctgtcgcttacaagaacgcgatcgaaccacttcgtgcggcgttgagaat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3899090 |
tagggtacacaccagcctcagagcttagcttggaagagatgaacctactatctgtcgcttacaagaacgcgaccgaaccacttcgtgcggcgttgagaat |
3898991 |
T |
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| Q |
210 |
cctttcgaaggaggaag |
226 |
Q |
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||||||||||||||||| |
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| T |
3898990 |
cctttcgaaggaggaag |
3898974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 215
Target Start/End: Original strand, 46283103 - 46283293
Alignment:
| Q |
25 |
agagaagagtatgtgttccatgcaaaactagcacaacaagcggaacgctacgaggagatggtttccttcatgcagaagatagttgtagggtacacaccag |
124 |
Q |
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|||||| ||||||||| || |||||||| ||| ||||||| |||||||||||||||||||| ||||||||||||||| | || || |||| ||||||| |
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| T |
46283103 |
agagaacagtatgtgtacctagcaaaactcgcagaacaagctgaacgctacgaggagatggtctccttcatgcagaagcttgtagtggggtccacaccat |
46283202 |
T |
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| Q |
125 |
cctcagagcttagcttggaagagatgaacctactatctgtcgcttacaagaacgcgatcgaaccacttcgtgcggcgttgagaatcctttc |
215 |
Q |
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| T |
46283203 |
catcagagcttagcgtcgaagagaggaacctcatatccgtcgcttacaagaacgtgatcggatcgctacgtgctgcgtggagaatcgtttc |
46283293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 5521 - 5305
Alignment:
| Q |
10 |
gcagagagactaaggagagaagagtatgtgttccatgcaaaactagcacaacaagcggaacgctacgaggagatggtttccttcatgcagaagatagttg |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5521 |
gcagagagactaaggagagaagagtatgtgttccatgcaaaactagcacaacaagcggaacgctacgaggagatggtttccttcatgcagaagatagttg |
5422 |
T |
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| Q |
110 |
tagggtacacaccagcctcagagcttagcttggaagagatgaacctactatctgtcgcttacaagaacgcgatcgaaccacttcgtgcggcgttgagaat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5421 |
tagggtacacaccagcctcagagcttagcttggaagagatgaacctactatctgtcgcttacaagaacgcgaccgaaccacttcgtgcggcgttgagaat |
5322 |
T |
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| Q |
210 |
cctttcgaaggaggaag |
226 |
Q |
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|||||| |||||||||| |
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| T |
5321 |
cctttcaaaggaggaag |
5305 |
T |
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