View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4238_low_14 (Length: 237)

Name: NF4238_low_14
Description: NF4238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4238_low_14
NF4238_low_14
[»] chr8 (3 HSPs)
chr8 (42-221)||(9670078-9670249)
chr8 (149-222)||(9689381-9689454)
chr8 (140-175)||(9671881-9671916)


Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 42 - 221
Target Start/End: Complemental strand, 9670249 - 9670078
Alignment:
Q  42 ctatttgaaaatgcacacgttttttagatttgcatttaattcaatttattgataagtgtaaaagttggaccctatagttaacctagtatgcgacaagccg 141  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  9670249 ctatttgaaaatgcacacgttttttagatttgcatttaattaaatttattgataagtgtaaaagttggaccctatagttaacctagtatgcgac------ 9670156  T
Q  142 atacttccacttcccaagttagaatatgtgtaactcaatgcctaaaatattgaacagtttgtccataatctaatctgtct 221  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9670155 --acttccacttcccaagttagaatatgtgtaactcaatgcctaaaatattgaacagtttgtccataatctaatctgtct 9670078  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 9689454 - 9689381
Alignment:
Q  149 cacttcccaagttagaatatgtgtaactcaatgcctaaaatattgaacagtttgtccataatctaatctgtctt 222  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||  ||| ||||||||||| ||||    
T  9689454 cacttcccaagttagaatatgtgtaactcaatgcctaaaatatcgaaccgttgctccctaatctaatctctctt 9689381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 175
Target Start/End: Complemental strand, 9671916 - 9671881
Alignment:
Q  140 cgatacttccacttcccaagttagaatatgtgtaac 175  Q
    ||||||||||||||||||||||||||||||||||||    
T  9671916 cgatacttccacttcccaagttagaatatgtgtaac 9671881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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