View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4238_low_3 (Length: 467)
Name: NF4238_low_3
Description: NF4238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4238_low_3 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 224 - 467
Target Start/End: Original strand, 41240787 - 41241030
Alignment:
| Q |
224 |
gagatcaacatggattgtagatccatcatccatgaagctatattagttagtggatgatcaaatacttcatcaaagtacgatgattttaggtgtgttatta |
323 |
Q |
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| T |
41240787 |
gagatcaacatggattgtagatccatcatccatgaagctatattagttagtggatgatcaaatacttcatcaaagtacgatgattttaggtgtgttatta |
41240886 |
T |
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| Q |
324 |
agtcagacatatataactctgcgttcatatggcttcttgagacatgtagttttagagttgatatctttgaagtcgattttaattttatgtgtgtggaatt |
423 |
Q |
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| T |
41240887 |
agttaaacatacatgactctgcgttcatatggcttcgtgagacatgtagttttagagttgatatctttgaagtcgattttaattttatgtgtgtggaatt |
41240986 |
T |
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| Q |
424 |
agattcttgttgttattgtttaatgactaatttaatttagatat |
467 |
Q |
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| T |
41240987 |
agattcttgttgttattgtttaatgactaatttaatttagatat |
41241030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 41240582 - 41240756
Alignment:
| Q |
19 |
aatcctgacggcacacaaatcttgctcatgaacactccataaaattcaatgcaattttatcaaaaagatatcattttgacaaaaacccatgtttactttt |
118 |
Q |
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| T |
41240582 |
aatcctgacggcacacaaatcttgctcatgaacactccataaaattcaatgcaattttatcaaaaagatatcattttgacaaaaacccatgtttactttt |
41240681 |
T |
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| Q |
119 |
tggataacatgcatcattcaattttcaatgcttagaatccttcactcaccctatttgctctaattatgtgttcaa |
193 |
Q |
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| T |
41240682 |
tggataacatgcatcattcaattttcaatgcttagaatccttcactcaccctatttgctctaattatgtgttcaa |
41240756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 45 - 193
Target Start/End: Complemental strand, 41247195 - 41247049
Alignment:
| Q |
45 |
catgaacactccataaaattcaatgcaattttatcaaaaagatatcattttgacaaaaacccatgtttactttttggataacatgcatcattcaattttc |
144 |
Q |
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| T |
41247195 |
catgaacacttcataaaattcaatgcagttctataaaaaagatataattttgacaaaaatccatgtttactttttagataacatgtatcattcaattttc |
41247096 |
T |
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| Q |
145 |
aatgcttagaatccttcactcaccctatttgctctaattatgtgttcaa |
193 |
Q |
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| T |
41247095 |
--tgtttagaatccttctttcaccctattttctctaattatatgttcaa |
41247049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 251 - 429
Target Start/End: Complemental strand, 41246998 - 41246816
Alignment:
| Q |
251 |
atccatgaagctatattagttagtggatgatcaaatacttc--atcaaagtacgatgattttaggtgtgttattaagtcagacatatataactctgcgtt |
348 |
Q |
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| T |
41246998 |
atccatgaagctatattagctgatggatgatcaaatacttcatatcaaattacaataactttaggtatgttattaagtcagacatacatgattttgtatt |
41246899 |
T |
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| Q |
349 |
--catatggcttcttgagacatgtagttttagagttgatatctttgaagtcgattttaattttatgtgtgtggaattagattc |
429 |
Q |
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| T |
41246898 |
tgtatatgtcttcttgagacatacagttttagggttgttatcttggaagtcaatttgaattttatgtgtgtggaggtagattc |
41246816 |
T |
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