View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4239_high_1 (Length: 766)

Name: NF4239_high_1
Description: NF4239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4239_high_1
NF4239_high_1
[»] chr3 (1 HSPs)
chr3 (18-755)||(49575435-49576192)


Alignment Details
Target: chr3 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 18 - 755
Target Start/End: Original strand, 49575435 - 49576192
Alignment:
Q  18 gtatggtcttgctttcttgggtgtggcttattataatcattcaaagttgcaggcacttaaggctaaagaagcacagaagaaggttacacaagctgatgaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49575435 gtatggtcttgctttcttgggtgtggcttattataatcattcaaagttgcaggcacttaaggctaaagaagcacagaagaaggttacacaagctgatgaa 49575534  T
Q  118 gaaactggaaggttgcttgaggatagagaaggtgatggatcagggaagagaaatgatcagcagaattgattttcattcaattgcatttaccttataattc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  49575535 gaaactggaaggttgcttgaggatagagaaggtgatggatcagggaagagaaatgatcagcagaattgattttcattcaattgcatttaccttttaattc 49575634  T
Q  218 aagaatctcnnnnnnnnnnnnnnnnnnngattatgcaacaaaataataag---ttataaggaagaggatcaattggtgtttagatctggaggtagtaaca 314  Q
    |||||||||                   ||||||||||||||| ||||||   ||||||||||||||||||||||||||||||||||| |||||||||||    
T  49575635 aagaatctcaaaaagaaaagacaaaaaagattatgcaacaaaagaataagttattataaggaagaggatcaattggtgtttagatctgaaggtagtaaca 49575734  T
Q  315 acaaggaacttgaatcctctgagaaaatagccaagatttggta--nnnnnnnnnnnnnnncctatagtatttattattagggtttgagatttgcattttg 412  Q
    |||||||||||||||||||||||||||||||||||||||||||                 |||||||    |||||||||||||||||||||||||||||    
T  49575735 acaaggaacttgaatcctctgagaaaatagccaagatttggtattttttttttgttttttcctatag----tattattagggtttgagatttgcattttg 49575830  T
Q  413 atgctggtagagccaataataatatgttattactagagtgaagtgtttcaaatcctttatttatgattaa-nnnnnnnnnnnaaactttccttttccggt 511  Q
    ||||||||||||||   ||||||||||||||||||||||||||||| |||||||||||||||||||||||             || ||||||||||| ||    
T  49575831 atgctggtagagcc---aataatatgttattactagagtgaagtgtctcaaatcctttatttatgattaatttttttttttttaaatttccttttccagt 49575927  T
Q  512 gcttagttttatgttatgttgttggtagggactatcagtattttgag-----------atttattcatagtactagtacatgtctatta----------t 590  Q
    |||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||          |    
T  49575928 gcttagttttatgttatgttgttggtagggactatcagtattttgagtttaaatgcttatttattcatagtactagtacatgtctattatatgtctgtct 49576027  T
Q  591 atacttgcatattctggtctgttatatgatgttgaaaagcgattaaaaatattgagtgaggaataatatagtaattggatgctatggtttaactctgatg 690  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  49576028 atacttgcatattctggtctgttatatgatgttgaaaagcgattaaaaagatttagtgaggaataatatagtaattggatgctatggtttaactctgatg 49576127  T
Q  691 agtttatattgaatacatggtttcttagccaagatgttgcggaattactctgcttctgttctgtg 755  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49576128 agtttatattgaatacatggtttcttagccaagatgttgcggaattactctgcttctgttctgtg 49576192  T

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