View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4239_high_10 (Length: 277)
Name: NF4239_high_10
Description: NF4239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4239_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 74 - 265
Target Start/End: Complemental strand, 12801761 - 12801570
Alignment:
| Q |
74 |
caacaacaacaatcaatgtcttcctcacctttcttcatcactgatccaaatcaaactttccaacaagaccttcatcaaggacaattctcaaacaaacaac |
173 |
Q |
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| T |
12801761 |
caacaacaacaatcaatgtcttcctcacctttcttcatcactgatccaaatcaaactttccaacaagaccttcatcaaggacaattctcaaacaaacaac |
12801662 |
T |
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| Q |
174 |
ttcatcttcatcatggtctcatgcaacttcccgatcttcaaggaaataccaataacaacacaacttcttcatcggtatcgccttttaaccta |
265 |
Q |
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| T |
12801661 |
ttcatcttcatcatggtctcatgcaacttcctgatcttcaaggaaataccaataacaacacaacttcttcgtcggtatcgccttttaaccta |
12801570 |
T |
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