View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4239_high_13 (Length: 254)

Name: NF4239_high_13
Description: NF4239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4239_high_13
NF4239_high_13
[»] chr1 (23 HSPs)
chr1 (106-243)||(51064661-51064798)
chr1 (110-200)||(27133144-27133234)
chr1 (71-199)||(3288021-3288154)
chr1 (88-200)||(181579-181695)
chr1 (111-200)||(16763868-16763957)
chr1 (119-200)||(47074391-47074471)
chr1 (123-200)||(4692758-4692834)
chr1 (1-67)||(51064579-51064643)
chr1 (82-166)||(48491580-48491667)
chr1 (108-166)||(25537791-25537849)
chr1 (198-243)||(284566-284611)
chr1 (109-200)||(10800976-10801060)
chr1 (198-243)||(24771905-24771950)
chr1 (198-243)||(40783656-40783701)
chr1 (199-243)||(23045279-23045323)
chr1 (198-243)||(33082977-33083022)
chr1 (199-239)||(321863-321903)
chr1 (148-200)||(8920046-8920098)
chr1 (199-237)||(51064995-51065033)
chr1 (110-148)||(51286652-51286690)
chr1 (110-167)||(2622030-2622087)
chr1 (198-243)||(23526472-23526517)
chr1 (108-165)||(41148120-41148177)
[»] scaffold0024 (1 HSPs)
scaffold0024 (71-200)||(11736-11868)
[»] chr3 (20 HSPs)
chr3 (71-200)||(43946355-43946487)
chr3 (88-204)||(55121314-55121433)
chr3 (108-196)||(21496813-21496901)
chr3 (70-200)||(14195159-14195292)
chr3 (106-193)||(54788994-54789081)
chr3 (110-193)||(8425210-8425290)
chr3 (110-193)||(19971910-19971990)
chr3 (144-200)||(38000464-38000520)
chr3 (198-243)||(19241667-19241712)
chr3 (198-243)||(29375365-29375410)
chr3 (198-243)||(36881513-36881558)
chr3 (199-243)||(13365076-13365120)
chr3 (199-243)||(46694110-46694154)
chr3 (199-243)||(18355868-18355912)
chr3 (199-243)||(32834989-32835033)
chr3 (161-200)||(2736713-2736752)
chr3 (161-200)||(22126445-22126484)
chr3 (161-200)||(40925759-40925798)
chr3 (198-231)||(37293436-37293469)
chr3 (199-243)||(3383309-3383353)
[»] chr5 (26 HSPs)
chr5 (71-200)||(19647117-19647250)
chr5 (110-200)||(35634958-35635048)
chr5 (108-200)||(19663013-19663105)
chr5 (88-197)||(37259277-37259386)
chr5 (110-194)||(38352107-38352191)
chr5 (108-200)||(19676827-19676920)
chr5 (71-200)||(38394981-38395109)
chr5 (88-167)||(34438381-34438463)
chr5 (110-200)||(42740241-42740330)
chr5 (108-196)||(11776070-11776156)
chr5 (122-198)||(29086286-29086362)
chr5 (108-167)||(7349570-7349629)
chr5 (71-167)||(29556788-29556887)
chr5 (198-243)||(12806852-12806897)
chr5 (198-243)||(30720491-30720536)
chr5 (199-243)||(36561099-36561143)
chr5 (199-243)||(40886610-40886654)
chr5 (198-243)||(23097723-23097768)
chr5 (207-243)||(734347-734383)
chr5 (199-243)||(25683229-25683273)
chr5 (161-200)||(22270285-22270324)
chr5 (120-158)||(15302623-15302661)
chr5 (206-240)||(25773885-25773919)
chr5 (198-243)||(1056624-1056669)
chr5 (206-243)||(11319789-11319826)
chr5 (160-200)||(21744499-21744539)
[»] chr4 (27 HSPs)
chr4 (107-199)||(24535092-24535184)
chr4 (108-200)||(43335299-43335391)
chr4 (108-200)||(7114371-7114463)
chr4 (82-200)||(16401175-16401296)
chr4 (108-200)||(44504869-44504961)
chr4 (108-187)||(27599661-27599740)
chr4 (114-187)||(53816126-53816199)
chr4 (197-243)||(14261277-14261323)
chr4 (198-243)||(21310654-21310699)
chr4 (198-243)||(24706246-24706291)
chr4 (198-243)||(25704884-25704929)
chr4 (198-243)||(44569070-44569115)
chr4 (199-243)||(12071793-12071837)
chr4 (201-243)||(21661537-21661579)
chr4 (201-243)||(21670301-21670343)
chr4 (198-243)||(22321267-22321312)
chr4 (206-243)||(40122494-40122531)
chr4 (71-138)||(9816430-9816500)
chr4 (199-243)||(19692955-19692999)
chr4 (199-243)||(19703540-19703584)
chr4 (161-200)||(14797280-14797319)
chr4 (200-243)||(21064994-21065037)
chr4 (209-243)||(50768095-50768129)
chr4 (125-193)||(55405152-55405217)
chr4 (206-243)||(20249021-20249058)
chr4 (198-243)||(32543712-32543757)
chr4 (198-234)||(39295418-39295454)
[»] chr2 (15 HSPs)
chr2 (108-200)||(5885318-5885410)
chr2 (83-200)||(41318232-41318351)
chr2 (110-193)||(5088804-5088884)
chr2 (198-243)||(22388137-22388182)
chr2 (198-243)||(23367022-23367067)
chr2 (110-183)||(43327750-43327820)
chr2 (198-243)||(1102734-1102779)
chr2 (206-243)||(3519140-3519177)
chr2 (199-240)||(37673743-37673784)
chr2 (198-243)||(39938403-39938448)
chr2 (199-243)||(1646520-1646564)
chr2 (199-243)||(12969740-12969784)
chr2 (154-198)||(17738017-17738061)
chr2 (199-243)||(40756911-40756955)
chr2 (108-151)||(19258386-19258429)
[»] chr7 (15 HSPs)
chr7 (122-200)||(17264488-17264566)
chr7 (108-200)||(8363852-8363944)
chr7 (108-200)||(18295197-18295288)
chr7 (108-167)||(380774-380833)
chr7 (112-193)||(19341096-19341175)
chr7 (110-193)||(37126754-37126834)
chr7 (119-200)||(3091437-3091516)
chr7 (198-243)||(27814044-27814089)
chr7 (198-243)||(40349194-40349239)
chr7 (108-166)||(21452038-21452096)
chr7 (198-243)||(25614352-25614397)
chr7 (206-243)||(36453131-36453168)
chr7 (108-166)||(12002188-12002246)
chr7 (198-243)||(47110683-47110728)
chr7 (199-243)||(10981741-10981785)
[»] chr8 (22 HSPs)
chr8 (70-200)||(20099084-20099216)
chr8 (82-200)||(18427758-18427879)
chr8 (69-172)||(32382338-32382444)
chr8 (69-172)||(32436293-32436399)
chr8 (110-200)||(35538694-35538784)
chr8 (198-243)||(11646324-11646369)
chr8 (198-243)||(30999523-30999568)
chr8 (198-243)||(36068313-36068358)
chr8 (198-243)||(43275398-43275443)
chr8 (199-243)||(7147146-7147190)
chr8 (199-243)||(37345804-37345848)
chr8 (199-243)||(40058303-40058347)
chr8 (199-243)||(40918731-40918775)
chr8 (198-243)||(2539929-2539974)
chr8 (198-243)||(3585684-3585729)
chr8 (198-243)||(35866846-35866891)
chr8 (83-132)||(4783418-4783469)
chr8 (161-200)||(42809742-42809781)
chr8 (108-166)||(27919139-27919197)
chr8 (199-243)||(28568151-28568195)
chr8 (199-243)||(28575744-28575788)
chr8 (201-237)||(35866616-35866652)
[»] chr6 (21 HSPs)
chr6 (108-198)||(25987990-25988081)
chr6 (122-200)||(10894959-10895037)
chr6 (88-200)||(27156372-27156487)
chr6 (108-200)||(26092700-26092793)
chr6 (70-166)||(14113862-14113961)
chr6 (108-196)||(6059753-6059841)
chr6 (111-167)||(31709567-31709623)
chr6 (110-193)||(97375-97455)
chr6 (198-243)||(1605811-1605856)
chr6 (198-243)||(8626715-8626760)
chr6 (198-243)||(13757440-13757485)
chr6 (199-243)||(7761533-7761577)
chr6 (199-243)||(29260425-29260469)
chr6 (134-200)||(17750063-17750129)
chr6 (108-166)||(32398469-32398527)
chr6 (198-243)||(15064694-15064739)
chr6 (198-243)||(17942676-17942721)
chr6 (199-243)||(4129659-4129703)
chr6 (199-243)||(31559738-31559782)
chr6 (206-243)||(8235858-8235895)
chr6 (108-148)||(14200649-14200689)
[»] scaffold0285 (1 HSPs)
scaffold0285 (111-200)||(7714-7803)
[»] scaffold0054 (2 HSPs)
scaffold0054 (111-200)||(3552-3641)
scaffold0054 (199-243)||(45686-45730)
[»] scaffold1770 (1 HSPs)
scaffold1770 (199-243)||(394-438)
[»] scaffold0005 (1 HSPs)
scaffold0005 (161-200)||(42412-42451)


Alignment Details
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 106 - 243
Target Start/End: Original strand, 51064661 - 51064798
Alignment:
Q  106 cgtcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaactacatactccg 205  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  51064661 cgtcaaaataaactaaaatatataaattatattgcatacaatacatttaagttgtaataaatcaaaaatcgatcattcaaaatttaaactacatactccg 51064760  T
Q  206 tccgtttcacaatacttgtccattttagagaataattt 243  Q
    || |||||||||||||||||||||||||||||||||||    
T  51064761 tctgtttcacaatacttgtccattttagagaataattt 51064798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 110 - 200
Target Start/End: Complemental strand, 27133234 - 27133144
Alignment:
Q  110 aaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaactacata 200  Q
    |||||||||||||||||||| || |||||  |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27133234 aaaataaactaaaatatatagatcatattaaatacaacatatttaagtcgtaataaatcaaaaaccgatcattcaaaatttaaactacata 27133144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 71 - 199
Target Start/End: Original strand, 3288021 - 3288154
Alignment:
Q  71 cagtggcagaaccagataaaaaagtttggggtagccgtca----aaataaactaaaa-tatataaattatattgcatacaacacatttaagttgtaataa 165  Q
    ||||||| || ||||| ||||||||||||||| |||| ||    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  3288021 cagtggcggagccagacaaaaaagtttggggtggccgccatcaaaaataaactaaaaatatataaattatattgcatataacacatttaagttgtaataa 3288120  T
Q  166 atcaaaaaccgatcattcaaaatttaaactacat 199  Q
    | ||||||   |||||| ||||||||||| ||||    
T  3288121 accaaaaattaatcatttaaaatttaaaccacat 3288154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 88 - 200
Target Start/End: Complemental strand, 181695 - 181579
Alignment:
Q  88 aaaaaagtttggggtagccgtca----aaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattc 183  Q
    ||||||||||||||| |||| ||    ||| |||||||||||||||||| | |||||||| || |||||||||| |||||||| |||||| |||||||||    
T  181695 aaaaaagtttggggtggccgccataaaaaaaaaactaaaatatataaatcacattgcatataatacatttaagtcgtaataaaccaaaaatcgatcattc 181596  T
Q  184 aaaatttaaactacata 200  Q
    |||||||||||||||||    
T  181595 aaaatttaaactacata 181579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 111 - 200
Target Start/End: Original strand, 16763868 - 16763957
Alignment:
Q  111 aaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaactacata 200  Q
    |||||||| ||||||||||||| ||||||||||||| |||||||||| |||||||| |||||||  ||| ||||||||||||||||||||    
T  16763868 aaataaaccaaaatatataaatcatattgcatacaatacatttaagtcgtaataaaccaaaaacgaatcgttcaaaatttaaactacata 16763957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 200
Target Start/End: Original strand, 47074391 - 47074471
Alignment:
Q  119 taaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaactacata 200  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||| ||||||  |||||||||||||||||||||||||    
T  47074391 taaaatatataaattatattgcatgcaacacatttaa-ttgtaataaaccaaaaattgatcattcaaaatttaaactacata 47074471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 123 - 200
Target Start/End: Complemental strand, 4692834 - 4692758
Alignment:
Q  123 atatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaactacata 200  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||    
T  4692834 atatataaatcatattccatacaacacatttaagttgtaataaatcaaaaatcgatcattc-aaatgtaaactacata 4692758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 51064579 - 51064643
Alignment:
Q  1 ctgcactccaattcaagttattttcgtttcagcctcttcttggcaaggtcaaaatcactaatctata 67  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||    
T  51064579 ctgcactccaattcaagttattt-cgtttcagcctcttcttggcaaggtc-aaatcactaatatata 51064643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 48491580 - 48491667
Alignment:
Q  82 ccagataaaaaagtttggggtagccg---tcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaa 166  Q
    ||||| ||||||||||||| | ||||   ||||||||||||||||||||||||| ||||||  ||||||||| |||||||||||||||    
T  48491580 ccagacaaaaaagtttgggatggccgccatcaaaataaactaaaatatataaatcatattgtttacaacacacttaagttgtaataaa 48491667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 25537849 - 25537791
Alignment:
Q  108 tcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaa 166  Q
    |||||||||| ||||||||||||||||||||| ||| || |||||||||||||||||||    
T  25537849 tcaaaataaattaaaatatataaattatattgtatataaaacatttaagttgtaataaa 25537791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 284611 - 284566
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||    
T  284611 atactccctccgtttcataatacttgtccattttagagaataattt 284566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 200
Target Start/End: Original strand, 10800976 - 10801060
Alignment:
Q  109 caaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaactacata 200  Q
    |||||||||| ||||||||||||| ||||||||||||| | ||||| || |||||       ||||||||| ||||||||||||||||||||    
T  10800976 caaaataaaccaaaatatataaatcatattgcatacaatatatttaggtcgtaat-------aaaccgatcgttcaaaatttaaactacata 10801060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 24771905 - 24771950
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||    
T  24771905 atactccctccgtttcataatacttgtccattttagagaataattt 24771950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 40783656 - 40783701
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||    
T  40783656 atactccctccgtttcataatacttgtccattttagagaataattt 40783701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 23045279 - 23045323
Alignment:
Q  199 tactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||    
T  23045279 tactccctccgtttcataatacttgtccattttagagaataattt 23045323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 33083022 - 33082977
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||| ||||||||| ||||||||||||||||| ||||||||||    
T  33083022 atactccctccgtttcataatacttgtccattttaaagaataattt 33082977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 321903 - 321863
Alignment:
Q  199 tactccgtccgtttcacaatacttgtccattttagagaata 239  Q
    |||||| ||||||||| ||||||||||||||||||||||||    
T  321903 tactccctccgtttcataatacttgtccattttagagaata 321863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 8920098 - 8920046
Alignment:
Q  148 acatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaactacata 200  Q
    ||||||||||||||||||| | |||  ||||||||||||||||||| ||||||    
T  8920098 acatttaagttgtaataaaccgaaagtcgatcattcaaaatttaaattacata 8920046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 237
Target Start/End: Complemental strand, 51065033 - 51064995
Alignment:
Q  199 tactccgtccgtttcacaatacttgtccattttagagaa 237  Q
    |||||| ||||||||||||||||||||||||||| ||||    
T  51065033 tactccctccgtttcacaatacttgtccattttaaagaa 51064995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 148
Target Start/End: Complemental strand, 51286690 - 51286652
Alignment:
Q  110 aaaataaactaaaatatataaattatattgcatacaaca 148  Q
    ||||||||||||||||||||||| |||||| ||||||||    
T  51286690 aaaataaactaaaatatataaatcatattgtatacaaca 51286652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 2622030 - 2622087
Alignment:
Q  110 aaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaat 167  Q
    ||||||||||||||| ||  ||| || |||||||||||  ||||||||||||||||||    
T  2622030 aaaataaactaaaatgtaggaatcatgttgcatacaacgaatttaagttgtaataaat 2622087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 23526517 - 23526472
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||| ||||||||| ||||||||||||||||  ||||||||||    
T  23526517 atactccctccgtttcataatacttgtccattttgaagaataattt 23526472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 41148120 - 41148177
Alignment:
Q  108 tcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataa 165  Q
    ||||||||||| ||||||||||||  |  ||| ||||||||| |||||||||||||||    
T  41148120 tcaaaataaacaaaaatatataaaccactttgtatacaacacgtttaagttgtaataa 41148177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 71 - 200
Target Start/End: Original strand, 11736 - 11868
Alignment:
Q  71 cagtggcagaaccagataaaaaagtttggggtagccg---tcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaat 167  Q
    ||||||| || ||||| ||||| ||||||||| ||||   | ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||     
T  11736 cagtggcggagccagacaaaaaggtttggggtggccgcaattaaaataaactaaaatatataaatcatattgcatataacacatttaagttgtaataaac 11835  T
Q  168 caaaaaccgatcattcaaaatttaaactacata 200  Q
    |||||| ||||||||||||||||||||||||||    
T  11836 caaaaaacgatcattcaaaatttaaactacata 11868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 71 - 200
Target Start/End: Complemental strand, 43946487 - 43946355
Alignment:
Q  71 cagtggcagaaccagataaaaaagtttggggtagccg---tcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaat 167  Q
    |||||||||| ||||| ||||||||||||| ||||||   ||||||||||||||||||||||||| ||||||  ||||||||||||||||   |||||||    
T  43946487 cagtggcagagccagacaaaaaagtttgggatagccgccatcaaaataaactaaaatatataaatcatattggttacaacacatttaagtcaaaataaat 43946388  T
Q  168 caaaaaccgatcattcaaaatttaaactacata 200  Q
    |||||| ||||||||||||||||||||||||||    
T  43946387 caaaaatcgatcattcaaaatttaaactacata 43946355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 55121433 - 55121314
Alignment:
Q  88 aaaaaagtttggggtagccg---tcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattca 184  Q
    ||||||||||||||| ||||   |||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||    
T  55121433 aaaaaagtttggggtggccgccatcaaaataaattaaaatatataaattatattgcatgcaacacatttaacttgtaataaatcaaaaatcgatcattca 55121334  T
Q  185 aaatttaaactacatactcc 204  Q
    |||| ||||| |||||||||    
T  55121333 aaatctaaacaacatactcc 55121314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 21496901 - 21496813
Alignment:
Q  108 tcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaacta 196  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||  |||||||||||||||||||||    
T  21496901 tcaaaataaactaaaatatataaatcatattgcatacaacacatttaagttttaataaaccaaaaattgatcattcaaaatttaaacta 21496813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 70 - 200
Target Start/End: Original strand, 14195159 - 14195292
Alignment:
Q  70 tcagtggcagaaccagataaaaaagtttggggta---gccgtcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaa 166  Q
    |||||||| ||  |||| |||||||||||||||    ||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  14195159 tcagtggcggagtcagacaaaaaagtttggggtgactgccatcaaaataaactaaaatatataaatcatattgcatacaactcatttaagttgtaataaa 14195258  T
Q  167 tcaaaaaccgatcattcaaaatttaaactacata 200  Q
      ||||| | |||||| |||||||||||||||||    
T  14195259 ctaaaaatcaatcatttaaaatttaaactacata 14195292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 106 - 193
Target Start/End: Complemental strand, 54789081 - 54788994
Alignment:
Q  106 cgtcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaa 193  Q
    ||||||||||||||||||||||||||  |||||| ||| |||| ||||||||||||||||| |||||| |||||||||||||||||||    
T  54789081 cgtcaaaataaactaaaatatataaaccatattgaatataacatatttaagttgtaataaaccaaaaatcgatcattcaaaatttaaa 54788994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 193
Target Start/End: Original strand, 8425210 - 8425290
Alignment:
Q  110 aaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaa 193  Q
    |||||| |||||||||||||||| ||||| ||||||||| ||||||   |||||||| |||||| |||||||||||||||||||    
T  8425210 aaaatagactaaaatatataaatcatatttcatacaacatatttaa---gtaataaaccaaaaatcgatcattcaaaatttaaa 8425290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 193
Target Start/End: Original strand, 19971910 - 19971990
Alignment:
Q  110 aaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaa 193  Q
    |||||| |||||||||||||||| ||||| ||||||||| ||||||   |||||||| |||||| |||||||||||||||||||    
T  19971910 aaaatagactaaaatatataaatcatatttcatacaacatatttaa---gtaataaaccaaaaatcgatcattcaaaatttaaa 19971990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 38000464 - 38000520
Alignment:
Q  144 caacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaactacata 200  Q
    ||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||    
T  38000464 caacacatttaagttgtaatataccaaaaatcgatcattcaaaatttaaactacata 38000520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 19241667 - 19241712
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||    
T  19241667 atactccctccgtttcataatacttgtccattttagagaataattt 19241712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 29375410 - 29375365
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||    
T  29375410 atactccctccgtttcataatacttgtccattttagagaataattt 29375365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 36881558 - 36881513
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||    
T  36881558 atactccctccgtttcataatacttgtccattttagagaataattt 36881513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 13365120 - 13365076
Alignment:
Q  199 tactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||    
T  13365120 tactccctccgtttcataatacttgtccattttagagaataattt 13365076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 46694110 - 46694154
Alignment:
Q  199 tactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||    
T  46694110 tactccctccgtttcataatacttgtccattttagagaataattt 46694154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 18355868 - 18355912
Alignment:
Q  199 tactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    |||||| ||||||||||||||||||||||||||  ||||||||||    
T  18355868 tactccctccgtttcacaatacttgtccattttgaagaataattt 18355912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 32834989 - 32835033
Alignment:
Q  199 tactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    |||||| ||||||||| |||||||||||||| |||||||||||||    
T  32834989 tactccctccgtttcataatacttgtccattgtagagaataattt 32835033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 200
Target Start/End: Complemental strand, 2736752 - 2736713
Alignment:
Q  161 aataaatcaaaaaccgatcattcaaaatttaaactacata 200  Q
    |||||| |||||||| ||||||||||||||||||||||||    
T  2736752 aataaaccaaaaaccaatcattcaaaatttaaactacata 2736713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 22126445 - 22126484
Alignment:
Q  161 aataaatcaaaaaccgatcattcaaaatttaaactacata 200  Q
    |||||| |||||||| ||||||||||||||||||||||||    
T  22126445 aataaaccaaaaaccaatcattcaaaatttaaactacata 22126484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 200
Target Start/End: Complemental strand, 40925798 - 40925759
Alignment:
Q  161 aataaatcaaaaaccgatcattcaaaatttaaactacata 200  Q
    |||||| |||||||| ||||||||||||||||||||||||    
T  40925798 aataaaccaaaaaccaatcattcaaaatttaaactacata 40925759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 231
Target Start/End: Original strand, 37293436 - 37293469
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccatttt 231  Q
    ||||||| ||||||||||||||||||||||||||    
T  37293436 atactccctccgtttcacaatacttgtccatttt 37293469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 3383353 - 3383309
Alignment:
Q  199 tactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    |||||| | ||||| | ||||||||||||||||||||||||||||    
T  3383353 tactcctttcgttttataatacttgtccattttagagaataattt 3383309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 71 - 200
Target Start/End: Complemental strand, 19647250 - 19647117
Alignment:
Q  71 cagtggcagaaccagataaaaaagtttggggtagccg---tcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaa- 166  Q
    ||||||||||  |||| |||||||||||||||  |||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  19647250 cagtggcagagtcagacaaaaaagtttggggtgcccgccatcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaac 19647151  T
Q  167 tcaaaaaccgatcattcaaaatttaaactacata 200  Q
      ||||| || |||||||||||||||||||||||    
T  19647150 aaaaaaatcgttcattcaaaatttaaactacata 19647117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 110 - 200
Target Start/End: Original strand, 35634958 - 35635048
Alignment:
Q  110 aaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaactacata 200  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  35634958 aaaataaactaaaatatataaatcatattgcatataacacatttaagttgtaataaaccaaaaaacgatcattcaaaatttaaactacata 35635048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 108 - 200
Target Start/End: Original strand, 19663013 - 19663105
Alignment:
Q  108 tcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaactacata 200  Q
    |||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  19663013 tcaaaataaactaaaatatataatctatattgtatacaacacatttaagttgtaataaatcaaaaatcgattattcaaaatttaaactacata 19663105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 88 - 197
Target Start/End: Complemental strand, 37259386 - 37259277
Alignment:
Q  88 aaaaaagtttggggtagccgtcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaa 187  Q
    |||||||||||  || | ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||  |||||||||||||    
T  37259386 aaaaaagtttgttgtcggcgtcaaaataaactaaaatatataaatcatattgcatacaacatatttaagttgtaataaaccaaaagtcgatcattcaaaa 37259287  T
Q  188 tttaaactac 197  Q
    | ||||||||    
T  37259286 tgtaaactac 37259277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 38352191 - 38352107
Alignment:
Q  110 aaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaac 194  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  38352191 aaaataaactaaaatatatgaatcatattgcatacaacacatttaagttgtaataaaccaaaaatcgatcattcaaaatttaaac 38352107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 108 - 200
Target Start/End: Original strand, 19676827 - 19676920
Alignment:
Q  108 tcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattc-aaaatttaaactacata 200  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||| || ||| || |||||||||||||||||    
T  19676827 tcaaaataaactaaaatatataatttatattgcgtacaacacatttaagttgtaataaaccaaaaatcggtcaatcaaaaatttaaactacata 19676920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 200
Target Start/End: Original strand, 38394981 - 38395109
Alignment:
Q  71 cagtggcagaaccagataaaaaagtttggggtagccg---tcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaat 167  Q
    ||||||| || ||||| ||||| ||||||||| ||||   | ||||||||||||||||||||||| |||||||||| |||||||||||||    |||||     
T  38394981 cagtggcggagccagacaaaaaggtttggggtggccgcaattaaaataaactaaaatatataaatcatattgcatataacacatttaagt----ataaac 38395076  T
Q  168 caaaaaccgatcattcaaaatttaaactacata 200  Q
     ||||| ||||||||||||||||||||||||||    
T  38395077 taaaaaacgatcattcaaaatttaaactacata 38395109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 88 - 167
Target Start/End: Original strand, 34438381 - 34438463
Alignment:
Q  88 aaaaaagtttggggtagccg---tcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaat 167  Q
    ||||||||||||||| ||||   ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  34438381 aaaaaagtttggggtggccgccttcaaaataaactaaaatatataaatcatattgcatacaacaaatttaagttgtaataaat 34438463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 200
Target Start/End: Original strand, 42740241 - 42740330
Alignment:
Q  110 aaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaactacata 200  Q
    |||| |||||||||||||||||| ||||||||||||||||| ||||||  |||||||  ||||| ||||||||||||||||||||||||||    
T  42740241 aaaaaaaactaaaatatataaatcatattgcatacaacaca-ttaagtcataataaacaaaaaatcgatcattcaaaatttaaactacata 42740330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 11776156 - 11776070
Alignment:
Q  108 tcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaacta 196  Q
    ||||||||||||||||||||||||  |||||| |||| | |  ||||| ||||||||||||||||| ||||||||||||||||||||||    
T  11776156 tcaaaataaactaaaatatataaaagatattgtatacgata--tttaatttgtaataaatcaaaaatcgatcattcaaaatttaaacta 11776070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 29086362 - 29086286
Alignment:
Q  122 aatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaactaca 198  Q
    ||||||||||  ||||||||||||||| |||||||| |||||||| ||||||| |||||||||||||||| ||||||    
T  29086362 aatatataaaacatattgcatacaacatatttaagtcgtaataaaccaaaaactgatcattcaaaatttatactaca 29086286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 167
Target Start/End: Complemental strand, 7349629 - 7349570
Alignment:
Q  108 tcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaat 167  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||    
T  7349629 tcaaaataaactaaaatatataaatcatattgtatacaacacatttaacttgtaataaat 7349570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 167
Target Start/End: Original strand, 29556788 - 29556887
Alignment:
Q  71 cagtggcagaaccagataaaaaagtttggggtagccg---tcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaat 167  Q
    |||||||||| ||||| |||||||||||| ||  |||   ||||||||||| |||| ||| |||| || |||||||||||| ||||||||||||||||||    
T  29556788 cagtggcagagccagacaaaaaagtttggagtgaccgccatcaaaataaaccaaaagataaaaatcatgttgcatacaacaaatttaagttgtaataaat 29556887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 12806852 - 12806897
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||    
T  12806852 atactccctccgtttcataatacttgtccattttagagaataattt 12806897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 30720491 - 30720536
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||    
T  30720491 atactccctccgtttcataatacttgtccattttagagaataattt 30720536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 36561099 - 36561143
Alignment:
Q  199 tactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||    
T  36561099 tactccctccgtttcataatacttgtccattttagagaataattt 36561143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 40886610 - 40886654
Alignment:
Q  199 tactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||    
T  40886610 tactccctccgtttcataatacttgtccattttagagaataattt 40886654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 23097723 - 23097768
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||| ||||||||| |||||||||||||||| |||||||||||    
T  23097723 atactccttccgtttcataatacttgtccattttggagaataattt 23097768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 734347 - 734383
Alignment:
Q  207 ccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||||||||||||||||||||| |||||||||||    
T  734347 ccgtttcacaatacttgtccattttggagaataattt 734383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 25683229 - 25683273
Alignment:
Q  199 tactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    |||||| ||||||||| |||||||||||||||| |||||||||||    
T  25683229 tactccctccgtttcataatacttgtccattttggagaataattt 25683273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 22270285 - 22270324
Alignment:
Q  161 aataaatcaaaaaccgatcattcaaaatttaaactacata 200  Q
    |||||| |||||||| ||||||||||||||||||||||||    
T  22270285 aataaaccaaaaaccaatcattcaaaatttaaactacata 22270324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 158
Target Start/End: Original strand, 15302623 - 15302661
Alignment:
Q  120 aaaatatataaattatattgcatacaacacatttaagtt 158  Q
    ||||||||||||| |||||| ||||||||||||||||||    
T  15302623 aaaatatataaatcatattgtatacaacacatttaagtt 15302661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 25773919 - 25773885
Alignment:
Q  206 tccgtttcacaatacttgtccattttagagaataa 240  Q
    ||||||||| |||||||||||||||||||||||||    
T  25773919 tccgtttcataatacttgtccattttagagaataa 25773885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 1056624 - 1056669
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||| ||||||||||||||||||||  |||| |||||||||||    
T  1056624 atactccctccgtttcacaatacttgtcacttttggagaataattt 1056669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 11319826 - 11319789
Alignment:
Q  206 tccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  11319826 tccgtttcataatacttgtctattttagagaataattt 11319789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 21744499 - 21744539
Alignment:
Q  160 taataaatcaaaaaccgatcattcaaaatttaaactacata 200  Q
    ||||||| |||||| |||| |||||||||||||||||||||    
T  21744499 taataaaccaaaaatcgattattcaaaatttaaactacata 21744539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 107 - 199
Target Start/End: Original strand, 24535092 - 24535184
Alignment:
Q  107 gtcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaactacat 199  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| | |||||| |||||||||||||||||||||||||    
T  24535092 gtcaaaataaactaaaatatataaattatattacatataacacatttaagttgtaatacaccaaaaatcgatcattcaaaatttaaactacat 24535184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 108 - 200
Target Start/End: Original strand, 43335299 - 43335391
Alignment:
Q  108 tcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaactacata 200  Q
    ||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  43335299 tcaaagtaaactaaaatatatgaatcatattgcatacaacacatttaagttgtaatataccaaaaaccgatcattcaaaatttaaactacata 43335391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 108 - 200
Target Start/End: Complemental strand, 7114463 - 7114371
Alignment:
Q  108 tcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaactacata 200  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||| ||||||||||||||||||| ||||||    
T  7114463 tcaaaatgaactaaaatatataaattatattgcatacaatacatttaagttgtaataaactaaaaatcgatcattcaaaatttaaattacata 7114371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 82 - 200
Target Start/End: Complemental strand, 16401296 - 16401175
Alignment:
Q  82 ccagataaaaaagtttggggtagccg---tcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgat 178  Q
    ||||| ||||||||||| |||||||    |||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||| | |||| |||     
T  16401296 ccagacaaaaaagtttgaggtagcctccatcaaaataaagttaaatatataaatcatattgcatacaacacatttaagttgtaataaaccgaaaatcgaa 16401197  T
Q  179 cattcaaaatttaaactacata 200  Q
    ||||||||||||||||||||||    
T  16401196 cattcaaaatttaaactacata 16401175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 108 - 200
Target Start/End: Complemental strand, 44504961 - 44504869
Alignment:
Q  108 tcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaactacata 200  Q
    |||||||||| |||||||||||||| ||||| |||||||||||||||||| ||||||||||||||| | |||||| |||||||||||||||||    
T  44504961 tcaaaataaattaaaatatataaatcatattacatacaacacatttaagtcgtaataaatcaaaaatcaatcatttaaaatttaaactacata 44504869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 108 - 187
Target Start/End: Complemental strand, 27599740 - 27599661
Alignment:
Q  108 tcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaa 187  Q
    |||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||| ||| || |||||||||||||    
T  27599740 tcaaaataaactaaaataaataaatcatattgcatacaatacatttaagttgtaataaaccaataatcgatcattcaaaa 27599661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 187
Target Start/End: Original strand, 53816126 - 53816199
Alignment:
Q  114 taaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaa 187  Q
    ||||||||||||||||||| ||||| ||||||||| |||||| || ||||||| |||||| |||||||||||||    
T  53816126 taaactaaaatatataaatcatatttcatacaacatatttaaattttaataaaccaaaaagcgatcattcaaaa 53816199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 243
Target Start/End: Complemental strand, 14261323 - 14261277
Alignment:
Q  197 catactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||    
T  14261323 catactccctccgtttcataatacttgtccattttagagaataattt 14261277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 21310699 - 21310654
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||    
T  21310699 atactccctccgtttcataatacttgtccattttagagaataattt 21310654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 24706246 - 24706291
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||    
T  24706246 atactccctccgtttcataatacttgtccattttagagaataattt 24706291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 25704929 - 25704884
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||    
T  25704929 atactccctccgtttcataatacttgtccattttagagaataattt 25704884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 44569115 - 44569070
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||    
T  44569115 atactccctccgtttcataatacttgtccattttagagaataattt 44569070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 12071837 - 12071793
Alignment:
Q  199 tactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||    
T  12071837 tactccctccgtttcataatacttgtccattttagagaataattt 12071793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 21661537 - 21661579
Alignment:
Q  201 ctccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    |||| ||||||||| ||||||||||||||||||||||||||||    
T  21661537 ctccctccgtttcataatacttgtccattttagagaataattt 21661579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 21670301 - 21670343
Alignment:
Q  201 ctccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    |||| ||||||||| ||||||||||||||||||||||||||||    
T  21670301 ctccctccgtttcataatacttgtccattttagagaataattt 21670343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 22321267 - 22321312
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||| ||||||||| |||||||||| |||||||||||||||||    
T  22321267 atactccctccgtttcataatacttgtctattttagagaataattt 22321312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 243
Target Start/End: Original strand, 40122494 - 40122531
Alignment:
Q  206 tccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  40122494 tccgtttcataatacttgtccattttagagaataattt 40122531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 9816500 - 9816430
Alignment:
Q  71 cagtggcagaaccagataaaaaagtttggggtagccg---tcaaaataaactaaaatatataaattatatt 138  Q
    ||||||| || ||||| |||||||||||||||  |||   ||||||||||||||||||||||||| |||||    
T  9816500 cagtggcggagccagacaaaaaagtttggggtgaccgccatcaaaataaactaaaatatataaatcatatt 9816430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 19692999 - 19692955
Alignment:
Q  199 tactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    |||||| ||||| |||||||||||||| |||||||||||||||||    
T  19692999 tactccatccgtatcacaatacttgtctattttagagaataattt 19692955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 19703584 - 19703540
Alignment:
Q  199 tactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    |||||| ||||| |||||||||||||| |||||||||||||||||    
T  19703584 tactccatccgtatcacaatacttgtctattttagagaataattt 19703540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 14797280 - 14797319
Alignment:
Q  161 aataaatcaaaaaccgatcattcaaaatttaaactacata 200  Q
    |||||| |||||||| ||||||||||||||||||||||||    
T  14797280 aataaaccaaaaaccaatcattcaaaatttaaactacata 14797319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 243
Target Start/End: Complemental strand, 21065037 - 21064994
Alignment:
Q  200 actccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||| ||||||||| ||||||||| ||||||||||||||||||    
T  21065037 actccctccgtttcataatacttgttcattttagagaataattt 21064994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 243
Target Start/End: Complemental strand, 50768129 - 50768095
Alignment:
Q  209 gtttcacaatacttgtccattttagagaataattt 243  Q
    |||||| ||||||||||||||||||||||||||||    
T  50768129 gtttcataatacttgtccattttagagaataattt 50768095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 55405217 - 55405152
Alignment:
Q  125 atataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaa 193  Q
    |||||||| ||||| ||||||||| ||||||||   |||||| ||||||  ||||||||||||||||||    
T  55405217 atataaatcatatttcatacaacatatttaagt---aataaaccaaaaattgatcattcaaaatttaaa 55405152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 243
Target Start/End: Original strand, 20249021 - 20249058
Alignment:
Q  206 tccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  20249021 tccgtttcataatacttgtccattttggagaataattt 20249058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 32543757 - 32543712
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||| || |||||||||||||||||  ||||||||||||||||    
T  32543757 atactccttctgtttcacaatacttgtcgcttttagagaataattt 32543712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 39295454 - 39295418
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttaga 234  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  39295454 atactccttccgtttcataatacttgtccattttaga 39295418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 108 - 200
Target Start/End: Original strand, 5885318 - 5885410
Alignment:
Q  108 tcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaactacata 200  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  5885318 tcaaaataaactaaaacatatgaatcatattgcatacaacacatttaagttgtaataaaccaaaaaccaatcattcaaaatttaaactacata 5885410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 83 - 200
Target Start/End: Complemental strand, 41318351 - 41318232
Alignment:
Q  83 cagataaaaaagtttggggtagccg---tcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatc 179  Q
    |||| ||||||||||||||| ||||   ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||  ||||| |||||    
T  41318351 cagacaaaaaagtttggggtggccgccatcaaaataaactaaaatatataaatcatattgcata-aacacatttaagttgtaataaacaaaaaatcgatc 41318253  T
Q  180 attcaaaatttaaactacata 200  Q
    ||| |||||||||||||||||    
T  41318252 atttaaaatttaaactacata 41318232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 193
Target Start/End: Complemental strand, 5088884 - 5088804
Alignment:
Q  110 aaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaa 193  Q
    |||||| |||||||||||||||| ||||| ||||||||| ||||||   |||||||| |||||| |||||||||||||||||||    
T  5088884 aaaatagactaaaatatataaatcatatttcatacaacatatttaa---gtaataaaccaaaaatcgatcattcaaaatttaaa 5088804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 22388137 - 22388182
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||    
T  22388137 atactccctccgtttcataatacttgtccattttagagaataattt 22388182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 23367067 - 23367022
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||    
T  23367067 atactccctccgtttcataatacttgtccattttagagaataattt 23367022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 43327820 - 43327750
Alignment:
Q  110 aaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattc 183  Q
    |||||| |||||||||||||||| ||||| ||||||||| ||||||   |||||||| |||||| |||||||||    
T  43327820 aaaatagactaaaatatataaatcatatttcatacaacatatttaa---gtaataaaccaaaaatcgatcattc 43327750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 1102779 - 1102734
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||| ||||||||| ||||||||||||||| ||||||||||||    
T  1102779 atactccctccgtttcataatacttgtccatttgagagaataattt 1102734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 3519177 - 3519140
Alignment:
Q  206 tccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  3519177 tccgtttcataatacttgtccattttagagaataattt 3519140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 37673743 - 37673784
Alignment:
Q  199 tactccgtccgtttcacaatacttgtccattttagagaataa 240  Q
    |||||| ||||||||| |||||||||||||||||||||||||    
T  37673743 tactccttccgtttcataatacttgtccattttagagaataa 37673784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 39938448 - 39938403
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||| ||||||| | ||||||||||||||||||||||||||||    
T  39938448 atactccctccgttttataatacttgtccattttagagaataattt 39938403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 1646564 - 1646520
Alignment:
Q  199 tactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    |||||| ||||||||| ||||| ||||||||||||||||||||||    
T  1646564 tactccctccgtttcataatacctgtccattttagagaataattt 1646520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 12969740 - 12969784
Alignment:
Q  199 tactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    |||||| ||||||||| |||||||||||||||| |||||||||||    
T  12969740 tactccctccgtttcataatacttgtccattttggagaataattt 12969784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 17738017 - 17738061
Alignment:
Q  154 aagttgtaataaatcaaaaaccgatcattcaaaatttaaactaca 198  Q
    ||||||||||||| |||||| ||||||||||||||||||| ||||    
T  17738017 aagttgtaataaaccaaaaaacgatcattcaaaatttaaaataca 17738061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 40756911 - 40756955
Alignment:
Q  199 tactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    |||||| ||||||||| |||||||||||||||| |||||||||||    
T  40756911 tactccctccgtttcataatacttgtccattttggagaataattt 40756955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 151
Target Start/End: Original strand, 19258386 - 19258429
Alignment:
Q  108 tcaaaataaactaaaatatataaattatattgcatacaacacat 151  Q
    ||||||||||||||||||||||||| |||||| |||||| ||||    
T  19258386 tcaaaataaactaaaatatataaatcatattgtatacaatacat 19258429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 17264488 - 17264566
Alignment:
Q  122 aatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaactacata 200  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17264488 aatatataaattatattgtatacaacacatttaagtcgtaataaatcaaaaaccgatcattcaaaatttaaactacata 17264566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 108 - 200
Target Start/End: Complemental strand, 8363944 - 8363852
Alignment:
Q  108 tcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaactacata 200  Q
    ||||||||||||||||||||||||| |||||  | ||||||||||||||| || ||||| |||||| ||||||||||||||||||||||||||    
T  8363944 tcaaaataaactaaaatatataaatcatattaaacacaacacatttaagtcgttataaaccaaaaatcgatcattcaaaatttaaactacata 8363852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 108 - 200
Target Start/End: Complemental strand, 18295288 - 18295197
Alignment:
Q  108 tcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaactacata 200  Q
    ||||||||||||||  ||||||| |||||||| |||||| |||||||||| ||||||||| ||||| ||||||||||||||||||||||||||    
T  18295288 tcaaaataaactaatgtatataa-ttatattgtatacaatacatttaagtagtaataaataaaaaatcgatcattcaaaatttaaactacata 18295197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 108 - 167
Target Start/End: Complemental strand, 380833 - 380774
Alignment:
Q  108 tcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaat 167  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  380833 tcaaaataaactaaaatatataaatcatattgcatacaacaaatttaagttgtaataaat 380774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 112 - 193
Target Start/End: Complemental strand, 19341175 - 19341096
Alignment:
Q  112 aataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaa 193  Q
    ||||||| ||||||||| ||| |||||| |||  |||||||||||||||||||||||||||| ||||||||| |||||||||    
T  19341175 aataaacaaaaatatatgaatcatattgtata--acacatttaagttgtaataaatcaaaaatcgatcattccaaatttaaa 19341096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 193
Target Start/End: Complemental strand, 37126834 - 37126754
Alignment:
Q  110 aaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaa 193  Q
    |||||| |||||||||||||||| ||||| ||||||||| ||||||   |||||||| |||||| |||||||||||||||||||    
T  37126834 aaaatagactaaaatatataaatcatatttcatacaacatatttaa---gtaataaaccaaaaatcgatcattcaaaatttaaa 37126754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 200
Target Start/End: Complemental strand, 3091516 - 3091437
Alignment:
Q  119 taaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaactacata 200  Q
    |||||||||||||| |||||| ||||| ||  ||||||||||||||||  ||||  ||||||||||||||||||||||||||    
T  3091516 taaaatatataaatgatattgaatacatca--tttaagttgtaataaacaaaaattcgatcattcaaaatttaaactacata 3091437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 27814089 - 27814044
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||    
T  27814089 atactccctccgtttcataatacttgtccattttagagaataattt 27814044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 40349239 - 40349194
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||    
T  40349239 atactccctccgtttcataatacttgtccattttagagaataattt 40349194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 21452038 - 21452096
Alignment:
Q  108 tcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaa 166  Q
    ||||||||||||| ||||||||||| |||||  | ||||||||||||||| ||||||||    
T  21452038 tcaaaataaactataatatataaatcatattaaacacaacacatttaagtcgtaataaa 21452096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 25614352 - 25614397
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||| ||||||||| |||| |||||||||||||||||||||||    
T  25614352 atactccctccgtttcataataattgtccattttagagaataattt 25614397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 243
Target Start/End: Original strand, 36453131 - 36453168
Alignment:
Q  206 tccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  36453131 tccgtttcataatacttgtccattttagagaataattt 36453168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 12002188 - 12002246
Alignment:
Q  108 tcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaa 166  Q
    ||||||||||||| ||||||||||| |||||  | |||||||||||||||  |||||||    
T  12002188 tcaaaataaactataatatataaatcatattaaacacaacacatttaagtcataataaa 12002246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 47110728 - 47110683
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||| ||||||||| ||||||| | ||||||||||||||||||    
T  47110728 atactccctccgtttcataatacttattcattttagagaataattt 47110683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 10981785 - 10981741
Alignment:
Q  199 tactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    |||||| ||| ||||| |||| |||||||||||||||||||||||    
T  10981785 tactccctccatttcataatatttgtccattttagagaataattt 10981741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 70 - 200
Target Start/End: Complemental strand, 20099216 - 20099084
Alignment:
Q  70 tcagtggcagaaccagataaaaaagtttggggtagccgtca---aaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaa 166  Q
    |||||||| ||  ||| |||||||||||||||| | |||||   |||||||||||||||||||| | ||||||||||||| |||||||||||||||| ||    
T  20099216 tcagtggcggagtcagctaaaaaagtttggggtggtcgtcatcaaaataaactaaaatatataattcatattgcatacaatacatttaagttgtaatgaa 20099117  T
Q  167 tcaaaaaccgatcattcaaaatttaaactacata 200  Q
    ||||||| ||||||||||||| ||||||||||||    
T  20099116 tcaaaaatcgatcattcaaaa-ttaaactacata 20099084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 82 - 200
Target Start/End: Complemental strand, 18427879 - 18427758
Alignment:
Q  82 ccagataaaaaagtttggggtagccg---tcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgat 178  Q
    ||||| ||||||||||||||| | ||   |||||||||| |||||||| ||| | |||||||||||||||||||||| |||| ||||| |||||| | ||    
T  18427879 ccagacaaaaaagtttggggtggtcgccatcaaaataaaataaaatatttaagtcatattgcatacaacacatttaacttgttataaaccaaaaatcaat 18427780  T
Q  179 cattcaaaatttaaactacata 200  Q
      ||||||||||||||||||||    
T  18427779 tgttcaaaatttaaactacata 18427758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 172
Target Start/End: Complemental strand, 32382444 - 32382338
Alignment:
Q  69 ttcagtggcagaaccagataaaaaagtttggggtagccgtcaaaa--taaactaaaatatataaattatatt-gcatacaacacatttaagttgtaataa 165  Q
    ||||||||| || ||||| |||||| |||||||| ||||  ||||  |||| |||||||||||||| ||||| |||||||||||||||||||||||||||    
T  32382444 ttcagtggcggagccagacaaaaaaatttggggtggccgcaaaaaaataaaataaaatatataaatcatatttgcatacaacacatttaagttgtaataa 32382345  T
Q  166 atcaaaa 172  Q
    | |||||    
T  32382344 accaaaa 32382338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 172
Target Start/End: Complemental strand, 32436399 - 32436293
Alignment:
Q  69 ttcagtggcagaaccagataaaaaagtttggggtagccgtcaaaa--taaactaaaatatataaattatatt-gcatacaacacatttaagttgtaataa 165  Q
    ||||||||| || ||||| |||||| |||||||| ||||  ||||  |||| |||||||||||||| ||||| |||||||||||||||||||||||||||    
T  32436399 ttcagtggcggagccagacaaaaaaatttggggtggccgcaaaaaaataaaataaaatatataaatcatatttgcatacaacacatttaagttgtaataa 32436300  T
Q  166 atcaaaa 172  Q
    | |||||    
T  32436299 accaaaa 32436293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 200
Target Start/End: Original strand, 35538694 - 35538784
Alignment:
Q  110 aaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaactacata 200  Q
    |||||| | |||||||||||||| ||| |||||||||| |||||||||||||||||| || |||  ||  || |||| |||||||||||||    
T  35538694 aaaatagattaaaatatataaataatactgcatacaactcatttaagttgtaataaaccataaattgaatatgcaaagtttaaactacata 35538784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 11646324 - 11646369
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||    
T  11646324 atactccctccgtttcataatacttgtccattttagagaataattt 11646369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 30999523 - 30999568
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||    
T  30999523 atactccctccgtttcataatacttgtccattttagagaataattt 30999568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 36068358 - 36068313
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||    
T  36068358 atactccctccgtttcataatacttgtccattttagagaataattt 36068313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 43275398 - 43275443
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||    
T  43275398 atactccctccgtttcataatacttgtccattttagagaataattt 43275443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 7147190 - 7147146
Alignment:
Q  199 tactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||    
T  7147190 tactccctccgtttcataatacttgtccattttagagaataattt 7147146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 37345848 - 37345804
Alignment:
Q  199 tactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||    
T  37345848 tactccttccgtttcataatacttgtccattttagagaataattt 37345804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 40058303 - 40058347
Alignment:
Q  199 tactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||    
T  40058303 tactccctccgtttcataatacttgtccattttagagaataattt 40058347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 40918731 - 40918775
Alignment:
Q  199 tactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||    
T  40918731 tactccctccgtttcataatacttgtccattttagagaataattt 40918775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 2539929 - 2539974
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||| ||||||||| ||||||||||||||||| ||||||||||    
T  2539929 atactccttccgtttcataatacttgtccattttaaagaataattt 2539974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 3585729 - 3585684
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||| ||||||||| |||||||||| |||||||||||||||||    
T  3585729 atactccatccgtttcataatacttgtctattttagagaataattt 3585684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 35866891 - 35866846
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||| |||||||||||||||||||| ||||| |||||||||||    
T  35866891 atactccatccgtttcacaatacttgtctattttggagaataattt 35866846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 4783469 - 4783418
Alignment:
Q  83 cagataaaaaagtttggggtagccgtca-aaataaa-ctaaaatatataaat 132  Q
    |||||||||||||||||||||||||||| ||| ||| |||||||||||||||    
T  4783469 cagataaaaaagtttggggtagccgtcataaacaaatctaaaatatataaat 4783418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 200
Target Start/End: Complemental strand, 42809781 - 42809742
Alignment:
Q  161 aataaatcaaaaaccgatcattcaaaatttaaactacata 200  Q
    |||||| |||||||| ||||||||||||||||||||||||    
T  42809781 aataaaccaaaaaccaatcattcaaaatttaaactacata 42809742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 27919139 - 27919197
Alignment:
Q  108 tcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaa 166  Q
    |||||||||| |||||||||||||| |||||  |||||||||  |||| ||||||||||    
T  27919139 tcaaaataaattaaaatatataaatcatattctatacaacacgattaaattgtaataaa 27919197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 28568195 - 28568151
Alignment:
Q  199 tactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    |||||| ||| |||||||||||||||||||||| |||||| ||||    
T  28568195 tactccctccatttcacaatacttgtccattttggagaattattt 28568151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 28575788 - 28575744
Alignment:
Q  199 tactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    |||||| ||| |||||||||||||||||||||| |||||| ||||    
T  28575788 tactccctccatttcacaatacttgtccattttggagaattattt 28575744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 35866616 - 35866652
Alignment:
Q  201 ctccgtccgtttcacaatacttgtccattttagagaa 237  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  35866616 ctccttccgtttcacaatacttgtccattttaaagaa 35866652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 25988081 - 25987990
Alignment:
Q  108 tcaaaataaactaaaatatataaattatatt-gcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaactaca 198  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||| |||| |||||||||||||||||||    
T  25988081 tcaaaataaactaaaatatataaattatatttgcatacaacatatttaagttgtaataaattaaaaatcgataattcaaaatttaaactaca 25987990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 10894959 - 10895037
Alignment:
Q  122 aatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaactacata 200  Q
    |||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||    
T  10894959 aatatataaattatattgcatacaacacatttaattcgtaataaaccaaaaaccgatcattcaaaatttaaactacata 10895037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 88 - 200
Target Start/End: Original strand, 27156372 - 27156487
Alignment:
Q  88 aaaaaagtttggggtagccg---tcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattca 184  Q
    |||||||||| |||| ||||   |||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||  ||||||  |||||||||    
T  27156372 aaaaaagtttagggtggccgccatcaaaataaattaaaatatataaatcatattgcatactacacatttaagttgtaataagccaaaaattgatcattca 27156471  T
Q  185 aaatttaaactacata 200  Q
    ||||||||||||||||    
T  27156472 aaatttaaactacata 27156487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 108 - 200
Target Start/End: Complemental strand, 26092793 - 26092700
Alignment:
Q  108 tcaaaataaactaaaatatataaattatattg-catacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaactacata 200  Q
    ||||||||||||||||||||||||| |||||  ||||||||| ||||| |||||||||||||||||| |||| |||||||||||||||||||||    
T  26092793 tcaaaataaactaaaatatataaatcatatttacatacaacatatttatgttgtaataaatcaaaaatcgataattcaaaatttaaactacata 26092700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 166
Target Start/End: Original strand, 14113862 - 14113961
Alignment:
Q  70 tcagtggcagaaccagataaaaaagtttggggtagccg---tcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaa 166  Q
    ||||||||||| ||||| ||||||||||||| | ||||   ||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||    
T  14113862 tcagtggcagagccagacaaaaaagtttgggatcgccgccatcaaaataaactaaaatatataaatcatattgcatagaacacatttaagtagtaataaa 14113961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 108 - 196
Target Start/End: Original strand, 6059753 - 6059841
Alignment:
Q  108 tcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaacta 196  Q
    |||||||||| |||||||||||||| |||||| ||| |||| ||||||||| ||||||| |||||| |||||||| |||||||||||||    
T  6059753 tcaaaataaattaaaatatataaatcatattgtatataacatatttaagttataataaaccaaaaatcgatcatttaaaatttaaacta 6059841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 31709567 - 31709623
Alignment:
Q  111 aaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaat 167  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  31709567 aaataaactaaaatatataaatcatattgcatacaacaaatttaagttgtaataaat 31709623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 193
Target Start/End: Complemental strand, 97455 - 97375
Alignment:
Q  110 aaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaa 193  Q
    |||||| |||||||||||||||| ||| | ||||||||| ||||||   |||||||| |||||| |||||||||||||||||||    
T  97455 aaaatagactaaaatatataaatcatacttcatacaacatatttaa---gtaataaaccaaaaatcgatcattcaaaatttaaa 97375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 1605856 - 1605811
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||    
T  1605856 atactccctccgtttcataatacttgtccattttagagaataattt 1605811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 8626760 - 8626715
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||    
T  8626760 atactccctccgtttcataatacttgtccattttagagaataattt 8626715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 13757485 - 13757440
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||    
T  13757485 atactccatccgtttcataatacttgtccattttagagaataattt 13757440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 7761577 - 7761533
Alignment:
Q  199 tactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||    
T  7761577 tactccctccgtttcataatacttgtccattttagagaataattt 7761533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 29260469 - 29260425
Alignment:
Q  199 tactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||    
T  29260469 tactccctccgtttcataatacttgtccattttagagaataattt 29260425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 200
Target Start/End: Complemental strand, 17750129 - 17750063
Alignment:
Q  134 atattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaactacata 200  Q
    ||||||||||||||| |||||||||  ||||||| |||||  ||||||||||||||| || ||||||    
T  17750129 atattgcatacaacatatttaagttaaaataaattaaaaattgatcattcaaaatttgaagtacata 17750063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 32398527 - 32398469
Alignment:
Q  108 tcaaaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaa 166  Q
    ||||||||||||| ||||||||||| |||||  | ||||||||||||||| ||||||||    
T  32398527 tcaaaataaactataatatataaatcatattaaacacaacacatttaagtcgtaataaa 32398469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 15064694 - 15064739
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||| ||||||||| |||||||||||||||| |||||||||||    
T  15064694 atactccctccgtttcataatacttgtccattttggagaataattt 15064739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 17942721 - 17942676
Alignment:
Q  198 atactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||| ||||||||| |||||||||||||||| |||||||||||    
T  17942721 atactccctccgtttcataatacttgtccattttggagaataattt 17942676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 4129703 - 4129659
Alignment:
Q  199 tactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    |||||| ||||||||| ||||||||||||||||||| ||||||||    
T  4129703 tactccctccgtttcataatacttgtccattttagaaaataattt 4129659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 31559738 - 31559782
Alignment:
Q  199 tactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    |||||| ||||||||| ||||||| ||||||||||||||||||||    
T  31559738 tactccctccgtttcataatacttctccattttagagaataattt 31559782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 8235895 - 8235858
Alignment:
Q  206 tccgtttcacaatacttgtccattttagagaataattt 243  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  8235895 tccgtttcataatacttgtctattttagagaataattt 8235858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 14200649 - 14200689
Alignment:
Q  108 tcaaaataaactaaaatatataaattatattgcatacaaca 148  Q
    ||||||||||||| ||||||||||| || ||||||||||||    
T  14200649 tcaaaataaactagaatatataaataattttgcatacaaca 14200689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 111 - 200
Target Start/End: Original strand, 7714 - 7803
Alignment:
Q  111 aaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaactacata 200  Q
    |||||||| ||||||||||||| ||||||||||||| |||||||||| |||||||| |||||||  ||| ||||||||||||||||||||    
T  7714 aaataaaccaaaatatataaatcatattgcatacaatacatttaagtcgtaataaaccaaaaacgaatcgttcaaaatttaaactacata 7803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 111 - 200
Target Start/End: Complemental strand, 3641 - 3552
Alignment:
Q  111 aaataaactaaaatatataaattatattgcatacaacacatttaagttgtaataaatcaaaaaccgatcattcaaaatttaaactacata 200  Q
    |||||||| ||||||||||||| ||| ||||||||| |||||||||| |||||||| |||||||  ||| ||||||||||||||||||||    
T  3641 aaataaaccaaaatatataaatcataatgcatacaatacatttaagtcgtaataaaccaaaaacgaatcgttcaaaatttaaactacata 3552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 45730 - 45686
Alignment:
Q  199 tactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||    
T  45730 tactccctccgtttcataatacttgtccattttagagaataattt 45686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1770 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 438 - 394
Alignment:
Q  199 tactccgtccgtttcacaatacttgtccattttagagaataattt 243  Q
    |||||| ||||||||| ||||||||||||||||||| ||||||||    
T  438 tactccctccgtttcataatacttgtccattttagaaaataattt 394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 200
Target Start/End: Complemental strand, 42451 - 42412
Alignment:
Q  161 aataaatcaaaaaccgatcattcaaaatttaaactacata 200  Q
    |||||| |||||||| ||||||||||||||||||||||||    
T  42451 aataaaccaaaaaccaatcattcaaaatttaaactacata 42412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University