View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4239_high_14 (Length: 248)
Name: NF4239_high_14
Description: NF4239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4239_high_14 |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0097 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 248
Target Start/End: Complemental strand, 35832524 - 35832292
Alignment:
| Q |
11 |
atactggaaacattctgatcgcaataaatccattccaaacgctgcctcatatttatggtgcgcacatgatgcaacgatacaaggaagagccacttggaga |
110 |
Q |
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| T |
35832524 |
atactggaaacattctgatcgcaataaatccattccaaacgctgcctcatatttatggtgcgcacatgatgcaacgatacaaggaagatccacttggaga |
35832425 |
T |
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| Q |
111 |
actaagccctcatgtatttgcagtagctgaggttgcatataggtaatcttaaatttcttattatgattcaaatctcatttctaccattggattggagcaa |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
35832424 |
actaagccctcatgtatttgcagtagctgaggttgcatataggtaatcttaaatttcttattatgattcaaatctcatttctaccattgaa-----gcaa |
35832330 |
T |
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| Q |
211 |
atattaattgatgattttattaatatcagggcaatggt |
248 |
Q |
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| T |
35832329 |
atattaattgatgattttattaatatcagggcaatggt |
35832292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 135
Target Start/End: Complemental strand, 49001182 - 49001058
Alignment:
| Q |
11 |
atactggaaacattctgatcgcaataaatccattccaaacgctgcctcatatttatggtgcgcacatgatgcaacgatacaaggaagagccacttggaga |
110 |
Q |
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|||| |||||||||||||| ||||||||||| ||||||| || |||||||||||||||||||||||||| ||||||||| |||| ||||||| ||||||| |
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| T |
49001182 |
ataccggaaacattctgattgcaataaatccgttccaaaggccgcctcatatttatggtgcgcacatgaagcaacgatataagggagagccatttggaga |
49001083 |
T |
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| Q |
111 |
actaagccctcatgtatttgcagta |
135 |
Q |
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| T |
49001082 |
actaaaccctcatgtatttgcagta |
49001058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 23 - 135
Target Start/End: Complemental strand, 28999182 - 28999070
Alignment:
| Q |
23 |
ttctgatcgcaataaatccattccaaacgctgcctcatatttatggtgcgcacatgatgcaacgatacaaggaagagccacttggagaactaagccctca |
122 |
Q |
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||||||| ||||||||| |||| |||| ||||||||||||||||||||||| |||||||||| ||||||||| |||||||||| ||||| |||| ||||| |
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| T |
28999182 |
ttctgattgcaataaattcatttcaaaagctgcctcatatttatggtgcgcgcatgatgcaatgatacaagggagagccactttgagaattaagtcctca |
28999083 |
T |
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| Q |
123 |
tgtatttgcagta |
135 |
Q |
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| T |
28999082 |
tgtatttgtagta |
28999070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 155
Target Start/End: Original strand, 47693330 - 47693474
Alignment:
| Q |
11 |
atactggaaacattctgatcgcaataaatccattccaaacgctgcctcatatttatggtgcgcacatgatgcaacgatacaaggaagagccacttggaga |
110 |
Q |
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|||| |||||||| |||| ||||||||||||||||||| | |||||| |||||| ||| ||||||||||||| ||||||| || |||| ||||||| |
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| T |
47693330 |
ataccggaaacatattgattgcaataaatccattccaaagattacctcatctttatgatgcacacatgatgcaacagtacaagggagcgccatttggaga |
47693429 |
T |
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| Q |
111 |
actaagccctcatgtatttgcagtagctgaggttgcatataggta |
155 |
Q |
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| T |
47693430 |
gttgagccctcatgtatttgcagttgctgatgttgcatataggta |
47693474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 23 - 132
Target Start/End: Complemental strand, 46247 - 46140
Alignment:
| Q |
23 |
ttctgatcgcaataaatccattccaaacgctgcctcatatttatggtgcgcacatgatgcaacgatacaaggaagagccacttggagaactaagccctca |
122 |
Q |
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||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||| |||| |||| ||||| ||| |||||| |
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| T |
46247 |
ttctgattgcaataaatccattccaaaagctgcctcatatttat--tgcgcacatgatgcaatgatacaagagagagtcactctgagaattaaaccctca |
46150 |
T |
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| Q |
123 |
tgtatttgca |
132 |
Q |
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|||||||||| |
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| T |
46149 |
tgtatttgca |
46140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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