View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4239_high_20 (Length: 236)
Name: NF4239_high_20
Description: NF4239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4239_high_20 |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 99 - 236
Target Start/End: Original strand, 35832104 - 35832241
Alignment:
| Q |
99 |
gttacaagttcaataatgagtgccattaattgaatcatacttcaagaacttgttgttcaactgttcttccttcagtcacagctctaccacctaagaaagc |
198 |
Q |
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| T |
35832104 |
gttacaagttcaataatgagtgccattaattgaatcatacttcaagaacttgttgttcaactgttcttccttcagtcacagctctaccacctaagaaagc |
35832203 |
T |
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| Q |
199 |
taggaattgcataatcatttttgtagtttcagttttac |
236 |
Q |
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| T |
35832204 |
taggaattgcataatcatttttgtagtttcagttttac |
35832241 |
T |
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Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 131 - 236
Target Start/End: Complemental strand, 47693720 - 47693615
Alignment:
| Q |
131 |
aatcatacttcaagaacttgttgttcaactgttcttccttcagtcacagctctaccacctaagaaagctaggaattgcataatcatttttgtagtttcag |
230 |
Q |
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| T |
47693720 |
aatcatacttcaagaacttgttgttcaacggttcgtccttcagtggctgccctaccacctaagtaagcaaggtattgcataagcattttcgtagtttcag |
47693621 |
T |
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| Q |
231 |
ttttac |
236 |
Q |
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|||||| |
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| T |
47693620 |
ttttac |
47693615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 165
Target Start/End: Complemental strand, 48493567 - 48493538
Alignment:
| Q |
136 |
tacttcaagaacttgttgttcaactgttct |
165 |
Q |
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| T |
48493567 |
tacttcaagaacttgttgttcaactgttct |
48493538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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