View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4239_high_22 (Length: 212)
Name: NF4239_high_22
Description: NF4239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4239_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 9233100 - 9233295
Alignment:
| Q |
18 |
attaaggtctatagcgttcaacttaagaatagtcttactcataaa-catcgattattaaggtcatgtcttgtgcagtggttaagcttttta------att |
110 |
Q |
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| T |
9233100 |
attaaggtctatagctttcaacttaagaatagtcttactcataaagcatcgattattaaggtcatgtcttgtgcagtggctaagctttttataattaatt |
9233199 |
T |
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| Q |
111 |
acttatcctaatttttctaactatgatattttaacaccctaactttatatacactcattcaacacttcattttatcttcacatctcttcttctcac |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
9233200 |
acttatcctaatttttctaactatgatattttaacaccctaactttacatacactcattcaacacttcattttatcttcatctctcttcttatcac |
9233295 |
T |
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