View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4239_high_3 (Length: 469)

Name: NF4239_high_3
Description: NF4239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4239_high_3
NF4239_high_3
[»] chr1 (1 HSPs)
chr1 (4-453)||(27725444-27725908)


Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 4 - 453
Target Start/End: Complemental strand, 27725908 - 27725444
Alignment:
Q  4 ttcaaccattaattttatttttactaaccactataataagctataaaaaatcatctgttnnnnnnnnnnnntagcaagcaagaaaaggaaagaggagagg 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||    
T  27725908 ttcaaccattaattttatttttactaaccactataataagctataaaaaatcatctgttaaaaaaaaaa--tagcaagcaagaaaaggaaagaggagagg 27725811  T
Q  104 agcgtgctgaaaccacgtggaaaagtgaaggtggcatcataaaatagtcgtcgtgtctctttcctcgcccttccactctcatcttgatcttactactagt 203  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  27725810 agcgtgttgaaaccacgtggaaaagtgaaggtggcatcataaaatagtcgtcgtgtctctttcctcgcccttccactctcatcttgatcttactacttgt 27725711  T
Q  204 tactactacaaaacttttcaatttccatcacaaacaagtcacaaatacaacaacagagcttctcgta----ccttcattctcctattttg---------t 290  Q
    |||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||| |||    |||||||||| ||||||||         |    
T  27725710 tactactacaaaacttttcaatttccatc----acaagtcacaaatacaacaacagagcttctggtaccttccttcattctactattttgtattgttgtt 27725615  T
Q  291 gttgttgttgtccattca--ttattctacgaaatggcaatgctaactgctactgcttccattgtcacaaatctccgtcctctatcaccaatttcatttaa 388  Q
    |||||| |||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  27725614 gttgttcttgtccattcattttattctacgaaatggcaatgctaactgctactacttccattgtcacaaatctccgtcctctatcaccaatttcatttaa 27725515  T
Q  389 taattcgcgccaaatttcttctctcgga------acaactcgcctccacctcaaatgtcacgccacaaagg 453  Q
    ||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||    
T  27725514 taattcgcgccaaatttcttctctcggaacaagtacaactcgcctccacctcaaatgtcacgccacaaagg 27725444  T

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