View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4239_high_8 (Length: 293)
Name: NF4239_high_8
Description: NF4239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4239_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 3 - 279
Target Start/End: Complemental strand, 28962806 - 28962530
Alignment:
| Q |
3 |
gcagagaatcaattttcttttactgctaaattttgaactgtgaccatcatcatcaaacccttttatttaatttcataaaacgatgataagattccatcct |
102 |
Q |
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| T |
28962806 |
gcagagaatcaattttcttttactgctaaattttgaattgtgaccatcatcatcaaacccttttatttaatttcataaaacgatgataagattccatcct |
28962707 |
T |
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| Q |
103 |
ctgcaacttcatttgattattaaacttcttgataaaagcttcagctcttttattcaattcttcaggactcattgatttttctctcttcaatgaagctcta |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28962706 |
ctgcaacttcatttgattattaaacttcttgataaaagcttcagctcttttattcaattcttcaggactcattgatttttctctcttcaatgaagctcta |
28962607 |
T |
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| Q |
203 |
tcattgaaagtttcagactttttcaactctctttcagcccaagcaacatgatcgtcatcaccaccacaaaaaccgcc |
279 |
Q |
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|||||||| |||||||||||||||||||| |||| ||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
28962606 |
tcattgaatgtttcagactttttcaactccctttgagcccaagcaacaggatcatcatcaccaccacaaaaaccgcc |
28962530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 71 - 276
Target Start/End: Complemental strand, 29002467 - 29002262
Alignment:
| Q |
71 |
aatttcataaaacgatgataagattccatcctctgcaacttcatttgattattaaacttcttgataaaagcttcagctcttttattcaattcttcaggac |
170 |
Q |
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||||||| |||||| ||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29002467 |
aatttcagaaaacgctgataagattcaagcctctgcaacttcatctgattattaaacttcttgataaaagcttcagctcttttattcaattcctcaggac |
29002368 |
T |
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| Q |
171 |
tcattgatttttctctcttcaatgaagctctatcattgaaagtttcagactttttcaactctctttcagcccaagcaacatgatcgtcatcaccaccaca |
270 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||| || |
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| T |
29002367 |
tcattgatttttctcttttcaatgaagctctatcattgaaagtttcagactttttcaactccctttcagcccaagcaacaggatcatcatcaccactacc |
29002268 |
T |
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| Q |
271 |
aaaacc |
276 |
Q |
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|||||| |
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| T |
29002267 |
aaaacc |
29002262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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