View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4239_low_11 (Length: 287)
Name: NF4239_low_11
Description: NF4239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4239_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 7425628 - 7425361
Alignment:
| Q |
1 |
ttgtcaatctgccacgacttcggatatttcagacacagcgtaaataatctgtgatgttacagagacatgccctaggacttaaagagctaggt-ttaagaa |
99 |
Q |
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| T |
7425628 |
ttgtcaatctgccacgacttcggatatttcagacacagcataaataatctgtgatgttacagagaaatgccctaggacttaaagagctaggtgttaaaaa |
7425529 |
T |
|
| Q |
100 |
ggtccgccacaattttaatacaagagcctccaatcacctagttggcataaccaagaaagaacctgaaccaacaacatcaggttcaagcaatacaaaacac |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7425528 |
ggtccgccacaattttaatacaagagcctccaatcacctagttggcataaccaagaaagaacctgaaccaacaacatcaggttcaagcaatacaaaacac |
7425429 |
T |
|
| Q |
200 |
aaaagaaaaaccacctgaatcaagcgaaatcattttggttgggcaatgccaatcaatgttgtcaacac |
267 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7425428 |
aaaagaaaaaccacctgaatcaagcaaaatcattttggttgggcaatgccaatcaatgttgtcaacac |
7425361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 11356823 - 11356927
Alignment:
| Q |
140 |
gttggcataaccaagaaagaacctgaaccaacaacatcaggttcaagcaatacaaaacacaaaagaaaaaccacct-gaatcaagcgaaatcattttggt |
238 |
Q |
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|||| ||||||||| ||||| ||||||| ||||||| |||||||||||||||||||||| ||||||| ||||||| ||| |||| ||||||||||||| |
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| T |
11356823 |
gttgacataaccaa-aaagaccctgaactaacaacactaggttcaagcaatacaaaacaccaaagaaataccacctaaaataaagcaaaatcattttggt |
11356921 |
T |
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| Q |
239 |
tgggca |
244 |
Q |
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||||| |
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| T |
11356922 |
ggggca |
11356927 |
T |
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