View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4239_low_17 (Length: 245)
Name: NF4239_low_17
Description: NF4239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4239_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 2531713 - 2531942
Alignment:
| Q |
1 |
tgattcaaccaccaaattaatatttttcttgatgctacaggtcttcttgtttcattcctgcaagggtctcaatgttagtaacctgaggatcactaatagt |
100 |
Q |
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| T |
2531713 |
tgattgaacgaccaaattaatatttttattgatgctacaggtcttcttgtttcattcatgcaagggtctcaatgttagtaatctgagtatcactaatagt |
2531812 |
T |
|
| Q |
101 |
ccacgttcccatgtagctgttaatatgtgcaatggtgcaacattttctaatatatctattaattcacctggtactagccccaatactgatgggtttgaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2531813 |
ccacgttcccatgtagctgttaatatgtgcaatggtgcaacattttctaatatatctattaattcacctggtactagccccaatactgatgggtttgaca |
2531912 |
T |
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| Q |
201 |
ttgctttatccactcatattgtgatacatg |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
2531913 |
ttgctttatccactcatattgtgatacatg |
2531942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 2541256 - 2541485
Alignment:
| Q |
1 |
tgattcaaccaccaaattaatatttttcttgatgctacaggtcttcttgtttcattcctgcaagggtctcaatgttagtaacctgaggatcactaatagt |
100 |
Q |
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| T |
2541256 |
tgattgaacgaccaaattaatatttttattgatgctacaggtcttcttgtttcattcatgcaagggtctcaatgttagtaatctgagtatcactaatagt |
2541355 |
T |
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| Q |
101 |
ccacgttcccatgtagctgttaatatgtgcaatggtgcaacattttctaatatatctattaattcacctggtactagccccaatactgatgggtttgaca |
200 |
Q |
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| T |
2541356 |
ccacgttcccatgtagctgttaatatgtgcaatggtgcaacattttctaatatatctattaattcacctggtactagccccaatactgatgggtttgaca |
2541455 |
T |
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| Q |
201 |
ttgctttatccactcatattgtgatacatg |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
2541456 |
ttgctttatccactcatattgtgatacatg |
2541485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 53 - 202
Target Start/End: Original strand, 2555216 - 2555365
Alignment:
| Q |
53 |
cattcctgcaagggtctcaatgttagtaacctgaggatcactaatagtccacgttcccatgtagctgttaatatgtgcaatggtgcaacattttctaata |
152 |
Q |
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||||||||||| |||||||||||||| ||| |||||||| ||||| ||| | || ||||| ||||||| |||||||||| | ||||||||||| ||| |
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| T |
2555216 |
cattcctgcaatggtctcaatgttagaaacttgaggatcctgaatagcccaagatctcatgttgctgttactatgtgcaatcattcaacattttctcata |
2555315 |
T |
|
| Q |
153 |
tatctattaattcacctggtactagccccaatactgatgggtttgacatt |
202 |
Q |
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| T |
2555316 |
tatctattaattctgctgctactagccccaacactgatgggtttgacatt |
2555365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 50 - 220
Target Start/End: Original strand, 1829849 - 1830019
Alignment:
| Q |
50 |
tttcattcctgcaagggtctcaatgttagtaacctgaggatcactaatagtccacgttcccatgtagctgttaatatgtgcaatggtgcaacattttcta |
149 |
Q |
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|||||||| ||||| | ||| | |||||||||||| |||||||| ||||| || |||| |||||| | |||||||||||||| || ||||||| ||| |
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| T |
1829849 |
tttcattcttgcaacgatcttagtgttagtaacctaaggatcaccaatagcccgagttctcatgtatccattaatatgtgcaatcgtacaacattctctc |
1829948 |
T |
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| Q |
150 |
atatatctattaattcacctggtactagccccaatactgatgggtttgacattgctttatccactcatatt |
220 |
Q |
| |
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|| |||| || |||||||||| |||||| ||||| |||||||||||||||||| |||| |||||| ||||| |
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| T |
1829949 |
atgtatccatcaattcacctgctactagtcccaacactgatgggtttgacatttctttttccactgatatt |
1830019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 50 - 220
Target Start/End: Original strand, 1864294 - 1864464
Alignment:
| Q |
50 |
tttcattcctgcaagggtctcaatgttagtaacctgaggatcactaatagtccacgttcccatgtagctgttaatatgtgcaatggtgcaacattttcta |
149 |
Q |
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| T |
1864294 |
tttcattcttgcaacgatcttagtgttagtaacctaaggatcaccaatagcccgagttctcatgtatccattaatatgtgcaatcgtacaacattctctc |
1864393 |
T |
|
| Q |
150 |
atatatctattaattcacctggtactagccccaatactgatgggtttgacattgctttatccactcatatt |
220 |
Q |
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|| |||| || |||||||||| |||||| ||||| |||||||||||||||||| |||| |||||| ||||| |
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| T |
1864394 |
atgtatccatcaattcacctgctactagtcccaacactgatgggtttgacatttctttttccactgatatt |
1864464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 202
Target Start/End: Original strand, 2564890 - 2565039
Alignment:
| Q |
53 |
cattcctgcaagggtctcaatgttagtaacctgaggatcactaatagtccacgttcccatgtagctgttaatatgtgcaatggtgcaacattttctaata |
152 |
Q |
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||||||||||| |||||||||||||| ||| |||||||| ||||| ||| || ||||| ||||||||||||||||| | ||||||||||| ||| |
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| T |
2564890 |
cattcctgcaatggtctcaatgttaggaacttgaggatcttgaatagcccaaaatctcatgtttctgttaatatgtgcaatcattcaacattttctcata |
2564989 |
T |
|
| Q |
153 |
tatctattaattcacctggtactagccccaatactgatgggtttgacatt |
202 |
Q |
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||||||||||||| ||| | |||||||||| |||||||| ||||||||| |
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| T |
2564990 |
tatctattaattctgctgctgctagccccaacactgatggatttgacatt |
2565039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 117 - 198
Target Start/End: Original strand, 2549780 - 2549861
Alignment:
| Q |
117 |
ctgttaatatgtgcaatggtgcaacattttctaatatatctattaattcacctggtactagccccaatactgatgggtttga |
198 |
Q |
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||||||||||||||||| |||||||||||| ||||||| |||| ||| |||| |||||||||||| |||||||||||||| |
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| T |
2549780 |
ctgttaatatgtgcaatcatgcaacattttcctatatatccattagttctcctgctactagccccaacactgatgggtttga |
2549861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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