View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4239_low_19 (Length: 239)
Name: NF4239_low_19
Description: NF4239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4239_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 39608572 - 39608350
Alignment:
| Q |
1 |
aatttagccatgcatgcatgaacatcaaagaaatgcaaattaccagttttgttagttagagctacattcatttaacaggaaaagagacaaagaaagttat |
100 |
Q |
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| T |
39608572 |
aatttagccatgcatgcatgaacatcaaagaaatgcaaattaccagttttgttagatagagctacattcatttaacaggaaaagagacaaagaaagttat |
39608473 |
T |
|
| Q |
101 |
gatcatggcattggaatatagtagaattcacagaaagaaagagttgaagaaaaagaacctttagaaaatattgaaccaggaatcaactagctttctttat |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
39608472 |
gatcatggcattagaatatagtagaattcacagaaagaaagagttgaagaaaaagaacctttagaaaatgttgaaccaggaatcagctagctttctttat |
39608373 |
T |
|
| Q |
201 |
ctagagcactcggagaaaggagt |
223 |
Q |
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||||||||| ||||||||||||| |
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| T |
39608372 |
ctagagcacccggagaaaggagt |
39608350 |
T |
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