View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4239_low_2 (Length: 623)
Name: NF4239_low_2
Description: NF4239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4239_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 546; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 22 - 622
Target Start/End: Original strand, 39132013 - 39132614
Alignment:
| Q |
22 |
ggtctgaggtgttttcttttcttcccctggtatatgttattattcagcccaatctcttagttttagttaaactagaactgattttatggcagaaactggt |
121 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39132013 |
ggtctgaggcgttttcttttcttcccctggtatatgttattattcagcccaatctcttagttttagttaaactggaactgattttatggcagaaactggt |
39132112 |
T |
|
| Q |
122 |
tagttttgataaagtgaaattatgttgcagtttgtagattttgttcaggatcatatcataaagtagcaatatattgaagatggtagactcatttgtgcat |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
39132113 |
tagttttgataaagtgaaattatgttgcagtttgtagattttgttcaggatcatatcataaagtaacaatatattgaagatggtagactaatttgtgcat |
39132212 |
T |
|
| Q |
222 |
attataacttggcctacaagaataaactattctctctcttgcgataacacgcgcataatgcaaaactgaactctgagagcagttccatgaaaacaaactc |
321 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39132213 |
attataacttggcctacaagaataaactattcgctctcttgcgataacacgcacataatgcaaaactgaactctgagagcagttccatgaaaacaaactc |
39132312 |
T |
|
| Q |
322 |
atttgaaatcaagactcttgtttgtttttcttatttaaattatagtttatgaaacattccatactcttacacctgcatgttagttgtaaataagttgatt |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39132313 |
atttgaaatcaagactcttgtttgtttttcttatttaaattatagtttatgaaacattccatactcatacacctgcatgttagttgtaaataagttgatt |
39132412 |
T |
|
| Q |
422 |
gtgaacttaggataaggcc-agtctatattctggccagagacagaaaatttcagtctgagacatggtctgcatttcagaatacaatctaatgtctgtgga |
520 |
Q |
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| T |
39132413 |
gtgaacttaggataaggccaagtctatattctggccagagacagaaaatttcagtctgagacatggtctgcatttcagaatacaatctaatgtctgtgga |
39132512 |
T |
|
| Q |
521 |
tctacttaaccgtgtaaaggtaaatagtattgatattggacctacaccatcatccaatgttcaaatgaattagaattaacatgattctctctgctcctcc |
620 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||| |
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| T |
39132513 |
tctacttaaccgtgtaaaggtaactagtattgatattggacctacaccatcatccaatgttcaaataaattagaattaacaggattctctctattcctcc |
39132612 |
T |
|
| Q |
621 |
tc |
622 |
Q |
| |
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|| |
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| T |
39132613 |
tc |
39132614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 123 - 229
Target Start/End: Complemental strand, 39492573 - 39492467
Alignment:
| Q |
123 |
agttttgataaagtgaaattatgttgcagtttgtagattttgttcaggatcatatcataaagtagcaatatattgaagatggtagactcatttgtgcata |
222 |
Q |
| |
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|||||||||||||||||||| |||||||| ||||||||||||||||| || |||| |||||||||||||||||||| || |||| ||||||||||||| |
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| T |
39492573 |
agttttgataaagtgaaattttgttgcagcttgtagattttgttcagaatgtcatcagaaagtagcaatatattgaagctgttagattcatttgtgcata |
39492474 |
T |
|
| Q |
223 |
ttataac |
229 |
Q |
| |
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| ||||| |
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|
| T |
39492473 |
taataac |
39492467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 166
Target Start/End: Complemental strand, 39470398 - 39470309
Alignment:
| Q |
75 |
ctcttagttttagttaaactagaactgattttatggcagaaactggttagttttgataaagtgaaattatgttgcagtttgtagattttgtt |
166 |
Q |
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||||| ||||||||||| ||| |||||||||||||| | ||| ||||||||| ||||||||||||||| ||||||| |||||||||||||| |
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| T |
39470398 |
ctcttggttttagttaa-ctataactgattttatggaataaa-tggttagttatgataaagtgaaattttgttgcaccttgtagattttgtt |
39470309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 120 - 223
Target Start/End: Original strand, 2363524 - 2363627
Alignment:
| Q |
120 |
gttagttttgataaagtgaaattatgttgcagtttgtagattttgttcaggatcatatcataaagtagcaatatattgaagatggtagactcatttgtgc |
219 |
Q |
| |
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|||||||||||| |||||||||| | |||| ||| ||||||||||||| ||| |||||| ||| ||||||||||||| | || |||| |||| || || |
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| T |
2363524 |
gttagttttgatgaagtgaaattttcctgcaccttgcagattttgttcagaatcttatcatgaagcagcaatatattgaggctgttagattcatctgcgc |
2363623 |
T |
|
| Q |
220 |
atat |
223 |
Q |
| |
|
|||| |
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|
| T |
2363624 |
atat |
2363627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 252
Target Start/End: Original strand, 39126264 - 39126359
Alignment:
| Q |
157 |
agattttgttcaggatcatatcataaagtagcaatatattgaagatggtagactcatttgtgcatattataacttggcctacaagaataaactatt |
252 |
Q |
| |
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|||||||| | || |||||||| |||| |||| |||| |||| || | || |||||||||||||| |||||||| ||||||||||| ||||||| |
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| T |
39126264 |
agattttgcttagaatcatatctggaagttgcaacatatggaagttgtttgattcatttgtgcatataataacttgacctacaagaatcaactatt |
39126359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 358
Target Start/End: Original strand, 39372284 - 39372416
Alignment:
| Q |
224 |
tataacttggcctacaagaataaactattctctctcttgcgataacacgcgcataatgcaaaactgaactctgagagcagttccatgaaaacaaactcat |
323 |
Q |
| |
|
|||||||||||| |||||||||||||| | |||||||| | |||||| || ||||| ||||||| | |||| |||||| || |||||| ||||| |
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| T |
39372284 |
tataacttggccaacaagaataaactagttgatctcttgcaagaacacgtccagaatgccaaactgatttgtgagggcagttgcaagaaaaccaactcca |
39372383 |
T |
|
| Q |
324 |
ttgaaatcaagactcttgtttgtttttcttattta |
358 |
Q |
| |
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||||||||||| || ||||||||||||||||| |
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| T |
39372384 |
ttgaaatcaaggtact--tttgtttttcttattta |
39372416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 58 - 219
Target Start/End: Original strand, 39605019 - 39605179
Alignment:
| Q |
58 |
ttattattcagcccaatct-cttagttttagttaaactagaactgattttatggcagaaactggttagttttgataaagtgaaattatgttgcagtttgt |
156 |
Q |
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||||||||||||||| ||| ||||||||| ||||| | | ||||| || |||||| || || |||||||||| | |||||||||| || |||| ||| |
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| T |
39605019 |
ttattattcagcccagtctgcttagttttggttaat-tgggactgacttgatggcataa-ctagttagttttgttgaagtgaaattttggtgcaccttgc |
39605116 |
T |
|
| Q |
157 |
agattttgttcaggatcatatcataaagtagcaatatattgaagatggtagactcatttgtgc |
219 |
Q |
| |
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||||||||||||| | | |||||| ||| | ||| ||||||||| || |||| ||||| |||| |
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| T |
39605117 |
agattttgttcagaaacttatcatgaagaaacaaaatattgaagctgctagattcattcgtgc |
39605179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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