View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4239_low_23 (Length: 222)
Name: NF4239_low_23
Description: NF4239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4239_low_23 |
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| [»] scaffold0743 (1 HSPs) |
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Alignment Details
Target: scaffold0743 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold0743
Description:
Target: scaffold0743; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 48 - 191
Target Start/End: Original strand, 2051 - 2194
Alignment:
| Q |
48 |
tggaaggaaaagatacaactttactactctagtagtaaaagacacataacaatattgtttcggtatgagtcgaggctcaaactagtgtaatgtccagact |
147 |
Q |
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| T |
2051 |
tggaaggaaaagatacaacttaactgctctagtagaaaatgacacataaccatattgtttcggtatgagtcgaggctcaaactagtgtaatgtctagact |
2150 |
T |
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| Q |
148 |
tccatattgaatgtcaaggtggaccaaagtatggaattgtccta |
191 |
Q |
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| T |
2151 |
tccatattgtatgtcaaggtggactaaagtatggaatcgtccta |
2194 |
T |
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