View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4239_low_4 (Length: 417)
Name: NF4239_low_4
Description: NF4239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4239_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 17 - 401
Target Start/End: Complemental strand, 34996158 - 34995777
Alignment:
| Q |
17 |
atgtacactttggaggaggctgcacacatttgactttaccaacagact----atgacgcaaagcagaaaactgttggtcgaatatgggatgccgcatata |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34996158 |
atgtacactttggaggaggctgcacacatttgactttaccaacagactgactatgacgcaaagcagaaaactgttggtcgaatatgggatgccgcata-- |
34996061 |
T |
|
| Q |
113 |
tagccccttaacatggaaaagcttattcacgtaaataaacaagcaagggttattacaccaccgtagatcatgacatttgttcagaaggatggtgatttct |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34996060 |
--gccccttaacatggaaaagcttattcacgtaaataaacaagcaaggcttattacaccaccgtagatcatgacatttgttctgaaggatggtgatttct |
34995963 |
T |
|
| Q |
213 |
ctccaaatactcatcttttacatagaagacacaaataatcaaactcaagctattatttacgtatttttatctctttacttatcaattgtaaacttgcttt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34995962 |
ctccaaatactcatcttttacatagaagacacaaataatcaaactcaagc---tatttacgtatttttatctctttacttatcaattgtaaacttgcttt |
34995866 |
T |
|
| Q |
313 |
atatttgttaaaatgtcttttcttttatctttcaaaatcatcaggatgttcttagattccaccatattccctgtgaggtgagcaacaat |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34995865 |
atatttgttaaaatgtcttttcttttatctttcaaaatcatcaggatgttcttagattccaccatattccctgtgaggtgagcaacaat |
34995777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 378
Target Start/End: Complemental strand, 31785177 - 31785096
Alignment:
| Q |
298 |
ttgtaaacttgcttt-atatttgttaaaatgtcttttcttttatctttcaaaatcatcaggatgttcttagattccaccata |
378 |
Q |
| |
|
||||| ||||||||| |||||||| ||| ||| |||||||||| |||||||| |||| ||||| ||||||| ||||||||| |
|
|
| T |
31785177 |
ttgtacacttgcttttatatttgtcaaattgtattttcttttagctttcaaattcataaggatattcttaggctccaccata |
31785096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 376
Target Start/End: Original strand, 20521411 - 20521483
Alignment:
| Q |
304 |
acttgctttatatttgttaaaatgtcttttcttttatctttcaaaatcatcaggatgttcttagattccacca |
376 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||| |||||| |||| || || ||||||| || ||||| |
|
|
| T |
20521411 |
acttgttttatatttgttaaattgtcttttcttttactcttcaaattcattagaatattcttaggttgcacca |
20521483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University