View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4239_low_5 (Length: 355)
Name: NF4239_low_5
Description: NF4239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4239_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 32937884 - 32938098
Alignment:
| Q |
20 |
caatgctgctacatttgggctaggagctattcaggtaaaaagctatacatgttctacaatagattcggcttcataagagtatcgaataatcgaaatatca |
119 |
Q |
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| T |
32937884 |
caatgctgctacatttgggctaggagctattcaggtaaaaagctatacatgttctacaatagattcggcttcatatgagtatcgaataatcgaaatatca |
32937983 |
T |
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| Q |
120 |
acaacaaaaatcattcacaaacttttttaattatgcaggttgtaatgactggggttgctacttggttagtagacagaagtggtagaagagtgcttcttat |
219 |
Q |
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| T |
32937984 |
ataacaaaaatcattcacaaacttttttaattatgcaggttgtaatgactggggttgctacttggttagtagacagaagtggtagaagagtgcttcttat |
32938083 |
T |
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| Q |
220 |
agtaagtattaagac |
234 |
Q |
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| T |
32938084 |
agtaagtattaagac |
32938098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 298 - 345
Target Start/End: Original strand, 32938153 - 32938200
Alignment:
| Q |
298 |
ccattttagttaatttttattaatctcttgtaggtatcttcctctgtg |
345 |
Q |
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| T |
32938153 |
ccattttagttaatttttattaatctcttgtaggtatcttcctctgtg |
32938200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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