View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4239_low_6 (Length: 333)
Name: NF4239_low_6
Description: NF4239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4239_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 317
Target Start/End: Original strand, 45976932 - 45977234
Alignment:
| Q |
16 |
acatcatcgtatcgtacttaaacttattcactatatcgattagccaggtgtactgtatgtccttagccaggtgttttgtcnnnnnnnn-cgtcactgcag |
114 |
Q |
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| T |
45976932 |
acatcatagtatcgtacttaaacttattcactatatcgattagccaggtgtactgtatgtccttagccaggtgttttgtctttttttttcgtcactgcag |
45977031 |
T |
|
| Q |
115 |
aagtgagcttccttcccttcacctaactctagtctcagtgaatagatttgaagttgcctgtagnnnnnnnattccttatcaaatttgtggagcatgtttg |
214 |
Q |
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| T |
45977032 |
aagtgagcttccttcccttcacctagctctagtctcattgaatagatttgaagttgcctgtagtttttttattccttatcaaatttgtggagcatgtttg |
45977131 |
T |
|
| Q |
215 |
aatttaaattttgattttaaccctttgggaacatggtgacctgttctctgttagttctgttcagtaaatcttatagctagaagagcggaattctagtttg |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
45977132 |
aatttaaattttgattttaaccctttgggaacatggtgacctgttctctgttagttctgttcagtaaatcttatagctagaagagcgaaattctagtttg |
45977231 |
T |
|
| Q |
315 |
aag |
317 |
Q |
| |
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||| |
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| T |
45977232 |
aag |
45977234 |
T |
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