View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4239_low_7 (Length: 331)
Name: NF4239_low_7
Description: NF4239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4239_low_7 |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (4 HSPs) |
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| [»] scaffold1902 (1 HSPs) |
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| [»] scaffold1374 (1 HSPs) |
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| [»] scaffold0590 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 46604947 - 46605260
Alignment:
| Q |
18 |
agcaaatgcgtctactttttctttctgctcttattgctggacacagttttgaacgtcgtttaattgtttatggaaacatggtgaggagtgttaggaatat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46604947 |
agcaaatgcgtctactttttctttctgctcttattgctggacacagttttgaacgtcgtttaattgtttatggaaacatggtgaggagtgttaggaatat |
46605046 |
T |
|
| Q |
118 |
ttacttcgatagttattcattattttgctatacaaaattagaagaaaaattgctatacaaaaatttggcatcttctttaaatataggcatatatgatttt |
217 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46605047 |
ttacttcgataattattcattattttgctatacaaaattagaagaaaaattgctatacaaaaatttggcatcttctttaaatataggcatatatgatttt |
46605146 |
T |
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| Q |
218 |
gttataattcaaatgattatatacttccctgcaaatgattatacatatcggtgatatcacaagactatagtcaacaacttgtgtaaaatcaattgaaaga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46605147 |
gttataattcaaatgattatatacttccctgcaaatgattatacatatcggtgatatcacaagactatagtcaacaacttgtgtaaaatcaattgaaaga |
46605246 |
T |
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| Q |
318 |
ggaattgctctgtg |
331 |
Q |
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||||||||| |||| |
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| T |
46605247 |
ggaattgctttgtg |
46605260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 45448040 - 45447727
Alignment:
| Q |
18 |
agcaaatgcgtctactttttctttctgctcttattgctggacacagttttgaacgtcgtttaattgtttatggaaacatggtgaggagtgttaggaatat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45448040 |
agcaaatgcgtctactttttctttctgctcttattgctggacacagttttgaacgtcgtttaattgtttatggaaacatggtgaggagtgttaggaatat |
45447941 |
T |
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| Q |
118 |
ttacttcgatagttattcattattttgctatacaaaattagaagaaaaattgctatacaaaaatttggcatcttctttaaatataggcatatatgatttt |
217 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45447940 |
ttatttcgatagttattcattattttgctatacaaaattagaagaaaaattgctatacaaaaagttggcatcttctttaaatataggcatatatgatttt |
45447841 |
T |
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| Q |
218 |
gttataattcaaatgattatatacttccctgcaaatgattatacatatcggtgatatcacaagactatagtcaacaacttgtgtaaaatcaattgaaaga |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45447840 |
gttataattcaaatgattatatacttccctgcaaatgattatacatatcggtgatatcacaagactatagtcaacaaattgtgtaaaatcaattgaaaga |
45447741 |
T |
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| Q |
318 |
ggaattgctctgtg |
331 |
Q |
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||||||||| |||| |
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| T |
45447740 |
ggaattgctttgtg |
45447727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 4962889 - 4962965
Alignment:
| Q |
151 |
aaaattagaagaaaaattgctatacaaaaatttggcatcttctttaaatataggcatatatgattttgttataattc |
227 |
Q |
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||||||||||||||||||| |||||||||| |||| ||| |||| ||||||||| ||| |||||||||||| ||||| |
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| T |
4962889 |
aaaattagaagaaaaattgatatacaaaaagttggtatcctcttcaaatataggtatagatgattttgttaaaattc |
4962965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 292
Target Start/End: Original strand, 25561363 - 25561413
Alignment:
| Q |
242 |
ttccctgcaaatgattatacatatcggtgatatcacaagactatagtcaac |
292 |
Q |
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| T |
25561363 |
ttccctgcaaatgattatacatataagtgatatcacaagactatagtcaac |
25561413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 324
Target Start/End: Original strand, 25562080 - 25562117
Alignment:
| Q |
287 |
gtcaacaacttgtgtaaaatcaattgaaagaggaattg |
324 |
Q |
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|||||| |||| |||||||||||||||||||||||||| |
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| T |
25562080 |
gtcaacgacttatgtaaaatcaattgaaagaggaattg |
25562117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 33608892 - 33608680
Alignment:
| Q |
18 |
agcaaatgcgtctactttttctttctgctcttattgctggacacagttttgaacgtcgtttaattgtttatggaaacatggtgaggagtgttaggaata- |
116 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33608892 |
agcaaatgcgtctactttttctttctgctcttattgttggacacagttttgaacgtcgtttaattgtttatggaaacatggtgaggagtgttagcaaatg |
33608793 |
T |
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| Q |
117 |
--tttacttcgatagttattcattattttgctatacaaaattagaagaaaaattgctatacaaaaatttggcatcttctttaaatataggcatatatgat |
214 |
Q |
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| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33608792 |
cgtctacttcaatcgttattcattattttgctatacaaaattagaagaaaaattgctatacaaaaagttggcatcttctttaaatataggcatatatgat |
33608693 |
T |
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| Q |
215 |
tttgttataattc |
227 |
Q |
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||||||||||||| |
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| T |
33608692 |
tttgttataattc |
33608680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1902 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold1902
Description:
Target: scaffold1902; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 219
Target Start/End: Original strand, 857 - 924
Alignment:
| Q |
152 |
aaattagaagaaaaattgctatacaaaaatttggcatcttctttaaatataggcatatatgattttgt |
219 |
Q |
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|||||||||||||||||| |||||||||| |||||||| |||||||||||||| ||| |||||||||| |
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| T |
857 |
aaattagaagaaaaattgatatacaaaaagttggcatcctctttaaatataggtatagatgattttgt |
924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1374 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold1374
Description:
Target: scaffold1374; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 219
Target Start/End: Original strand, 1038 - 1105
Alignment:
| Q |
152 |
aaattagaagaaaaattgctatacaaaaatttggcatcttctttaaatataggcatatatgattttgt |
219 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||| |||||||||||||| ||| |||||||||| |
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| T |
1038 |
aaattagaagaaaaattgatatacaaaaagttggcatcctctttaaatataggtatagatgattttgt |
1105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0590 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0590
Description:
Target: scaffold0590; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 219
Target Start/End: Complemental strand, 2806 - 2739
Alignment:
| Q |
152 |
aaattagaagaaaaattgctatacaaaaatttggcatcttctttaaatataggcatatatgattttgt |
219 |
Q |
| |
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|||||||||||||||||| |||||||||| |||||||| |||||||||||||| ||| |||||||||| |
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| T |
2806 |
aaattagaagaaaaattgatatacaaaaagttggcatcctctttaaatataggtatagatgattttgt |
2739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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