View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4239_low_9 (Length: 299)
Name: NF4239_low_9
Description: NF4239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4239_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 4 - 277
Target Start/End: Complemental strand, 32219284 - 32219016
Alignment:
| Q |
4 |
atgtcgaagaatattgtcatcattttgggttgataaaaaagctcctaaatcccccatatctatgcttgtgttgctttggttcagcatgacccttagaaga |
103 |
Q |
| |
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|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32219284 |
atgtcgaacattattgtcatcattttgggttgataaaaaagctcctaaatcccccatatctatgcttgtgttgctttggttcagcatgacccttagaaga |
32219185 |
T |
|
| Q |
104 |
acttgcaatttttcttccattgcagccatatccttgctatgtttagtctccatctcttggaccttgtcagttaaacttttcacctcagcagcatgcnnnn |
203 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32219184 |
acttgcaatttttcttccattgcaaccatatctttgctatgtttagtctccatctcttggaccttgtcagttcaacttttcacctcagcagcatgc---- |
32219089 |
T |
|
| Q |
204 |
nnnnnnnnccatatctaccactttatttcttttcaacagagaagatgttgtaactcttccaatagcagcgcaat |
277 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
32219088 |
ttttttttccatatctgccactttatttcttttcaacagagaagatgttgtaactcttcc-atagcaacgcaat |
32219016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 4 - 277
Target Start/End: Complemental strand, 19893983 - 19893716
Alignment:
| Q |
4 |
atgtcgaagaatattgtcatcattttgggttgataaaaaagctcctaaatcccccatatctatgcttgtgttgctttggttcagcatgacccttagaaga |
103 |
Q |
| |
|
|||||||| | |||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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|
| T |
19893983 |
atgtcgaacattattgtcatcatttcgggttgataaaaaaactcctaaatcccccatatctatgcctgtgttgctttggttcagcatgactcttagaaga |
19893884 |
T |
|
| Q |
104 |
acttgcaatttttcttccattgcagccatatccttgctatgtttagtctccatctcttggaccttgtcagttaaacttttcacctcagcagcatgcnnnn |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19893883 |
acttgcaatttttcttccattgcagccatatcctttctatgtatagtctccatctcttggaccttgtcagttaaacttttcacctcagcagcatgc---- |
19893788 |
T |
|
| Q |
204 |
nnnnnnnnccatatctaccactttatttcttttcaacagagaagatgttgtaactcttccaatagcagcgcaat |
277 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
19893787 |
-tttttttccatagcttccactttatttcttttcaacagagaagatgttgtaactcttcc-atagcagcgcaat |
19893716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 4 - 277
Target Start/End: Original strand, 11490173 - 11490440
Alignment:
| Q |
4 |
atgtcgaagaatattgtcatcattttgggttgataaaaaagctcctaaatcccccatatctatgcttgtgttgctttggttcagcatgacccttagaaga |
103 |
Q |
| |
|
|||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||| |
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|
| T |
11490173 |
atgtcgaacattattgtcatcatttcgggttgataaaaaagctcctaaatcccccatatctatgcctgtgttgctttggttcagcatgactctaagaaga |
11490272 |
T |
|
| Q |
104 |
acttgcaatttttcttccattgcagccatatccttgctatgtttagtctccatctcttggaccttgtcagttaaacttttcacctcagcagcatgcnnnn |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11490273 |
acttgcaatttttcttccattgcagccatatcctttctatgtatggtctccatctcttggaccttgtcagttaaacttttcacctcagcagcatgc---- |
11490368 |
T |
|
| Q |
204 |
nnnnnnnnccatatctaccactttatttcttttcaacagagaagatgttgtaactcttccaatagcagcgcaat |
277 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
11490369 |
-tttttttccatatctgccactttatttcttttcaacagagaagatgttgtaactcttcc-atagcagcgcaat |
11490440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 4 - 277
Target Start/End: Complemental strand, 13779092 - 13778825
Alignment:
| Q |
4 |
atgtcgaagaatattgtcatcattttgggttgataaaaaagctcctaaatcccccatatctatgcttgtgttgctttggttcagcatgacccttagaaga |
103 |
Q |
| |
|
|||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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|
| T |
13779092 |
atgtcgaacattattgtcatcatttcgggttgataaaaaagctcctaaatcccccatatctatgcctgtgttgctttggttcagcatgactcttagaaga |
13778993 |
T |
|
| Q |
104 |
acttgcaatttttcttccattgcagccatatccttgctatgtttagtctccatctcttggaccttgtcagttaaacttttcacctcagcagcatgcnnnn |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13778992 |
acttgcaatttttcttccattgcagccatatcctttctatgtatagtctccatctcttggaccttgtcagttaaacttttcacctcagcagcatgc---- |
13778897 |
T |
|
| Q |
204 |
nnnnnnnnccatatctaccactttatttcttttcaacagagaagatgttgtaactcttccaatagcagcgcaat |
277 |
Q |
| |
|
|||||| | || |||||||||||||||||| |||| |||||||||||||||| ||||||||||||| |
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|
| T |
13778896 |
-tttttttccatatttgccgctttatttcttttcaacatagaatatgttgtaactcttcc-atagcagcgcaat |
13778825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 106
Target Start/End: Complemental strand, 24245132 - 24245030
Alignment:
| Q |
4 |
atgtcgaagaatattgtcatcattttgggttgataaaaaagctcctaaatcccccatatctatgcttgtgttgctttggttcagcatgacccttagaaga |
103 |
Q |
| |
|
|||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
24245132 |
atgtcgaacattattgtcatcatttcgggttgataaaaaagctcctaaatcccccatatctatgcctgtgttgctttggttcagcatgactcttagaaga |
24245033 |
T |
|
| Q |
104 |
act |
106 |
Q |
| |
|
||| |
|
|
| T |
24245032 |
act |
24245030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 24245017 - 24244953
Alignment:
| Q |
212 |
ccatatctaccactttatttcttttcaacagagaagatgttgtaactcttccaatagcagcgcaat |
277 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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|
| T |
24245017 |
ccatatctgccactttatttcttttcaatagagaagatgttgtaactcttcc-atagcagcgcaat |
24244953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 8729539 - 8729402
Alignment:
| Q |
19 |
gtcatcattttgggttgataaaaaagctcctaaatcccccatatctatgcttgtgttgctttggttcagcatgacccttagaagaacttgcaatttttct |
118 |
Q |
| |
|
|||||||| | |||||||||| |||||| | ||||||||| ||||| | | ||||||||||||||||||| ||| ||||||||||||||||| | |
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|
| T |
8729539 |
gtcatcatctggggttgataacaaagctgccaaatcccccctatcttggtcggaattgctttggttcagcatgaacctaagaagaacttgcaatttcccc |
8729440 |
T |
|
| Q |
119 |
tccattgcagccatatccttgctatgtttagtctccat |
156 |
Q |
| |
|
|||||||| ||||| || || |||||||| ||||||| |
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|
| T |
8729439 |
tccattgctgccatctctttactatgttttttctccat |
8729402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 264
Target Start/End: Complemental strand, 8729315 - 8729275
Alignment:
| Q |
224 |
ctttatttcttttcaacagagaagatgttgtaactcttcca |
264 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
8729315 |
ctttatttcttttcaagagagaaggtgttgtaactcttcca |
8729275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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