View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4240_high_1 (Length: 603)
Name: NF4240_high_1
Description: NF4240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4240_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 492; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 17 - 591
Target Start/End: Complemental strand, 41804451 - 41803878
Alignment:
| Q |
17 |
acttattaaattcacggatacatgataaggccaattctctatcagctgatcnnnnnnn-aagtcaacatttctatcatgtaactctaacttctgctgtgt |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41804451 |
acttattaaattcacggatacatgataaggccaattctctatcagctgatcttttttttaagtcaacatttctatcatgtaactctaacttctgctgtgt |
41804352 |
T |
|
| Q |
116 |
caaatcactgatctcttcaatgttgacccttgcttgctctttatattgtgcgtaaagaaattggtattgaatgtagaaatccttaataaattcagcaagt |
215 |
Q |
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||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41804351 |
taaagcactgatctcttcaatgttgacccttgcttgctcttcatattgtgcgtaaagaaattggtattgaatgtagaaatccttaataaattcagcaagt |
41804252 |
T |
|
| Q |
216 |
ggttccctcttcaaaacttctgccggggtgccatcctcgttaaggtcgtgatcattaacaaataagtttgattatcctttttactttgtcttcaatttct |
315 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||| |
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| T |
41804251 |
ggttccctcttcaaaacttctgtcggggtgccatcctcgttaaggtcgtgatcattaataagtaagtttgattatcctttttact--gtcttcaatttct |
41804154 |
T |
|
| Q |
316 |
gtagaaaaagtaaaaaggtccaaatcatttgttcgagctatcataaggtgatatacaaaaatcatagcatattttgcatcacgagcttccatcatatgac |
415 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
41804153 |
gtagaaaaagtaaaaaagtccaaatcatttgttcgagctaccataaggtgatatacaaaaatcatagcatattttgcatcgcgagcttccatcatatcac |
41804054 |
T |
|
| Q |
416 |
aattcagaagtcatggtgcatagagattgtacctgctttagctccctggagctgcttttctttatcatacttttcagtatcttcgagcttcttcatgata |
515 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41804053 |
aattcagaagtcatggtacatagagattgtacctgctttagctccctggagctgcttttctttatcatacttttcagtatcttcgagcttcttcatgata |
41803954 |
T |
|
| Q |
516 |
agattgataacagatagttccttttctctttctttggactccatttcaagttctgaaacttggttccgcggcccta |
591 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41803953 |
agattgataacagatagttccttttctctttctttggactccatttcaagttctgaaacttggttccgcggcccta |
41803878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 161 - 382
Target Start/End: Complemental strand, 41795898 - 41795681
Alignment:
| Q |
161 |
ttgtgcgtaaagaaattggtattgaatgtagaaatccttaataaattcagcaagtggttccctcttcaaaacttctgccggggtgccatcctcgttaagg |
260 |
Q |
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||||| ||||| |||||||||||| ||| || ||||| ||| |||||||||||||||||||||||||||| |||||| ||||| ||||| || | |||| |
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| T |
41795898 |
ttgtgtgtaaatcaattggtattgattgtggatatcctcaatcaattcagcaagtggttccctcttcaaaagttctgctggggtaccatcttcttcaagg |
41795799 |
T |
|
| Q |
261 |
tcgtgatcattaacaaataagtttgattatcctttttactttgtcttcaatttctgtagaaaaagta-aaaaggtccaaatcatttgttcgagctatcat |
359 |
Q |
| |
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| || ||| || ||||||||| | ||||||||| |||||||||||||||||||||| |||| || |||| ||| ||||||||||| || | | ||| |
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| T |
41795798 |
ttgtcatcttt----aataagtttcaatatccttttgactttgtcttcaatttctgtagcaaaattagaaaaagtcgaaatcatttgtatgatc-aacat |
41795704 |
T |
|
| Q |
360 |
aaggtgatatacaaaaatcatag |
382 |
Q |
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||||||||||||| | ||||||| |
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| T |
41795703 |
aaggtgatatacatatatcatag |
41795681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 520 - 579
Target Start/End: Complemental strand, 41810603 - 41810544
Alignment:
| Q |
520 |
tgataacagatagttccttttctctttctttggactccatttcaagttctgaaacttggt |
579 |
Q |
| |
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||||| |||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
41810603 |
tgatagcagatagttcctcttctctttctttggacttcatttcaagttctgaaatttggt |
41810544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 520 - 580
Target Start/End: Complemental strand, 41796961 - 41796901
Alignment:
| Q |
520 |
tgataacagatagttccttttctctttctttggactccatttcaagttctgaaacttggtt |
580 |
Q |
| |
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||||| ||||||| |||| ||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
41796961 |
tgatagcagatagctcctcttctctttctttggacttcatttcaagttctgaaatttggtt |
41796901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 191 - 435
Target Start/End: Complemental strand, 41803828 - 41803588
Alignment:
| Q |
191 |
gaaatccttaataaattcagcaagtggttccctcttcaaaacttctgccggggtgccatcctcgttaaggtcgtgatcattaacaaataagtttgattat |
290 |
Q |
| |
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|||||||| || |||| ||||| ||||||||||||||||| |||||| || | |||||||||| ||| | || || |||| ||||||||| ||| |
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| T |
41803828 |
gaaatcctcaaccaatttagcaaatggttccctcttcaaaagttctgctcggataccatcctcgtcaagtttgtcatatttaa----taagtttgaatat |
41803733 |
T |
|
| Q |
291 |
cctttttactttgtcttcaatttctgtagaaaaagt-aaaaaggtccaaatcatttgttcgagctatcataaggtgatatacaaaaatcatagcatattt |
389 |
Q |
| |
|
| || ||| ||||| | ||||||||||| |||||| ||||| |||||||||||||||| || | ||| | | ||||||||| |||||||||| ||||| |
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| T |
41803732 |
cattgctaccttgtcataaatttctgtaggaaaagtgaaaaaagtccaaatcatttgtttgatc-atccaaggctgatatacataaatcatagcgtattt |
41803634 |
T |
|
| Q |
390 |
tgcatcacgagcttccatcatatgacaattcagaagtcatggtgca |
435 |
Q |
| |
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|| | || ||||| |||||| ||||||||| ||||||||||| |
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| T |
41803633 |
tgtgttgtgatcttccgtcatatcacaattcagttgtcatggtgca |
41803588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 435 - 482
Target Start/End: Complemental strand, 41795615 - 41795568
Alignment:
| Q |
435 |
atagagattgtacctgctttagctccctggagctgcttttctttatca |
482 |
Q |
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|||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
41795615 |
atagagattgtacctgttttagctccctggagctgctcttctttatca |
41795568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 179 - 314
Target Start/End: Complemental strand, 37700920 - 37700790
Alignment:
| Q |
179 |
gtattgaatgtagaaatccttaataaattcagcaagtggttccctcttcaaaacttctgccggggtgccatcctcgttaaggtcgtgatcattaacaaat |
278 |
Q |
| |
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||||||| ||| |||||||| ||||| | ||||||||||||||||||||||| |||||| ||||| ||||| || | ||||| || ||| || ||| |
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| T |
37700920 |
gtattgattgtggaaatcctcaataa-taaagcaagtggttccctcttcaaaatttctgctggggtaccatcgtcttcaaggttgtcatcttt----aat |
37700826 |
T |
|
| Q |
279 |
aagtttgattatcctttttactttgtcttcaatttc |
314 |
Q |
| |
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|||||| | ||| ||||| ||||||||||||||||| |
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| T |
37700825 |
aagtttcaatattcttttcactttgtcttcaatttc |
37700790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 276 - 331
Target Start/End: Complemental strand, 41810434 - 41810379
Alignment:
| Q |
276 |
aataagtttgattatcctttttactttgtcttcaatttctgtagaaaaagtaaaaa |
331 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||| ||| ||||||||||| |
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|
| T |
41810434 |
aataagtttcaaaatcctttttactttgtcttcaatttctataggaaaagtaaaaa |
41810379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 482
Target Start/End: Complemental strand, 41803319 - 41803273
Alignment:
| Q |
436 |
tagagattgtacctgctttagctccctggagctgcttttctttatca |
482 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||| |
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|
| T |
41803319 |
tagagattgtaccttttttacctccctggagctgcttttctttatca |
41803273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 482
Target Start/End: Complemental strand, 41810301 - 41810255
Alignment:
| Q |
436 |
tagagattgtacctgctttagctccctggagctgcttttctttatca |
482 |
Q |
| |
|
|||||||| |||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
41810301 |
tagagattatacctgttttagctccctgaagctgcttttctttatca |
41810255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 289 - 331
Target Start/End: Complemental strand, 41803445 - 41803403
Alignment:
| Q |
289 |
atcctttttactttgtcttcaatttctgtagaaaaagtaaaaa |
331 |
Q |
| |
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|||||||||||||||||| |||||||| ||| ||||||||||| |
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| T |
41803445 |
atcctttttactttgtctccaatttctataggaaaagtaaaaa |
41803403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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